SMTL ID : 5a4p.1

Structure of UBE2Z provides functional insight into specificity in the FAT10 conjugation machinery

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 5 residues within 4Å: Chain A: G.171, T.174, V.175, R.250, D.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.174 Salt bridges: A:R.250, A:R.250, A:K.260 MLI.2: 4 residues within 4Å: Chain A: D.124, T.125, H.132, P.264 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.264 Hydrogen bonds: A:D.124, A:T.125 Salt bridges: A:H.132, A:H.132 MLI.3: 4 residues within 4Å: Chain A: A.203, Q.204, S.205, S.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.203, A:S.205, A:S.208 MLI.4: 4 residues within 4Å: Chain A: E.258, R.316, L.319, I.320 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.319 Hydrogen bonds: A:E.258 Water bridges: A:R.316 Salt bridges: A:R.316 MLI.6: 5 residues within 4Å: Chain A: D.124, T.125, V.126, D.127, M.128 No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 7 residues within 4Å: Chain A: R.250, M.297, H.307, D.309, S.312, L.313, R.316 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.307, A:R.316, A:R.316 PEG.7: 4 residues within 4Å: Chain A: C.100, L.101, L.102, P.156 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schelpe, J. et al., Structure of Ube2Z Provides Functional Insight Into Specificity in the Fat10 Conjugation Machinery. J.Biol.Chem. (2016)

Release Date

2015-11-18

Peptides

UBIQUITIN-CONJUGATING ENZYME E2 Z: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UBIQUITIN-CONJUGATING ENZYME E2 Z