- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 1 x MGC- GAL: beta-D-galactopyranose-(1-3)-methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside(Non-covalent)
- 3 x CA: CALCIUM ION(Non-covalent)
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.6: 4 residues within 4Å:- Chain A: Y.839, T.847, R.848, R.849
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:T.847
- Hydrogen bonds: A:R.849
- Water bridges: A:Y.839, A:T.847, A:T.847, A:V.937
CIT.7: 5 residues within 4Å:- Chain A: S.812, N.813, G.885, D.886, E.887
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:D.886
- Hydrogen bonds: A:N.813, A:D.886, A:D.886, A:E.887, A:E.887
- Water bridges: A:D.886, A:D.886, A:E.887
- 31 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 5 residues within 4Å:- Chain A: K.916, D.918, N.1097, L.1098, Q.1099
Ligand excluded by PLIPEDO.9: 4 residues within 4Å:- Chain A: S.1009, D.1010, N.1076, R.1078
Ligand excluded by PLIPEDO.10: 5 residues within 4Å:- Chain A: K.292, H.520, Q.576, H.577, F.578
Ligand excluded by PLIPEDO.11: 3 residues within 4Å:- Chain A: V.23, D.101, N.102
Ligand excluded by PLIPEDO.12: 3 residues within 4Å:- Chain A: D.167, L.178, K.180
Ligand excluded by PLIPEDO.13: 1 residues within 4Å:- Chain A: K.241
Ligand excluded by PLIPEDO.14: 8 residues within 4Å:- Chain A: K.320, Y.558, N.559, D.698, K.770, A.774, D.776
- Ligands: EDO.27
Ligand excluded by PLIPEDO.15: 6 residues within 4Å:- Chain A: H.324, N.559, T.563, L.696, Q.722, P.723
Ligand excluded by PLIPEDO.16: 4 residues within 4Å:- Chain A: S.21, V.99, V.100, D.101
Ligand excluded by PLIPEDO.17: 5 residues within 4Å:- Chain A: T.67, Y.68, K.69, E.77, L.79
Ligand excluded by PLIPEDO.18: 8 residues within 4Å:- Chain A: G.47, Q.48, V.49, Q.50, S.142, E.219, V.221, Y.226
Ligand excluded by PLIPEDO.19: 9 residues within 4Å:- Chain A: Y.864, F.866, N.899, M.903, N.921, V.922, A.923, Q.924, F.927
Ligand excluded by PLIPEDO.20: 6 residues within 4Å:- Chain A: P.387, D.413, Q.414, D.963, K.972, F.1087
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain A: Y.538, A.567, R.633, Q.643, G.645, Y.648
Ligand excluded by PLIPEDO.22: 5 residues within 4Å:- Chain A: N.102, Q.103, V.258, A.277, S.280
Ligand excluded by PLIPEDO.23: 6 residues within 4Å:- Chain A: F.106, F.135, N.138, L.140, H.230, S.231
Ligand excluded by PLIPEDO.24: 2 residues within 4Å:- Chain A: N.799, T.868
Ligand excluded by PLIPEDO.25: 5 residues within 4Å:- Chain A: W.197, K.256, I.281, M.282, N.283
Ligand excluded by PLIPEDO.26: 3 residues within 4Å:- Chain A: Q.98, H.105, D.107
Ligand excluded by PLIPEDO.27: 6 residues within 4Å:- Chain A: K.320, F.549, Y.558, A.774, N.775
- Ligands: EDO.14
Ligand excluded by PLIPEDO.28: 5 residues within 4Å:- Chain A: Q.705, L.707, T.715, L.716, D.717
Ligand excluded by PLIPEDO.29: 4 residues within 4Å:- Chain A: T.758, T.790, K.792, T.877
Ligand excluded by PLIPEDO.30: 4 residues within 4Å:- Chain A: G.206, G.207, D.210, H.484
Ligand excluded by PLIPEDO.31: 8 residues within 4Å:- Chain A: Y.574, F.578, D.610, N.614, L.637, P.651, N.653, W.654
Ligand excluded by PLIPEDO.32: 4 residues within 4Å:- Chain A: Y.248, K.469, E.470, K.473
Ligand excluded by PLIPEDO.33: 2 residues within 4Å:- Chain A: Y.745, H.756
Ligand excluded by PLIPEDO.34: 5 residues within 4Å:- Chain A: N.322, D.326, G.327, K.701, P.734
Ligand excluded by PLIPEDO.35: 5 residues within 4Å:- Chain A: W.1043, T.1044, D.1045, S.1046, K.1047
Ligand excluded by PLIPEDO.36: 4 residues within 4Å:- Chain A: D.644, T.678, T.679, W.680
Ligand excluded by PLIPEDO.37: 2 residues within 4Å:- Chain A: N.1073, A.1074
Ligand excluded by PLIPEDO.38: 4 residues within 4Å:- Chain A: Q.147, T.148, D.190, K.191
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gregg, K.J. et al., Structural Analysis of a Family 101 Glycoside Hydrolase in Complex with Carbohydrates Reveals Insights into Its Mechanism. J.Biol.Chem. (2015)
- Release Date
- 2015-09-02
- Peptides
- ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 1 x MGC- GAL: beta-D-galactopyranose-(1-3)-methyl 2-acetamido-2-deoxy-alpha-D-galactopyranoside(Non-covalent)
- 3 x CA: CALCIUM ION(Non-covalent)
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- 31 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gregg, K.J. et al., Structural Analysis of a Family 101 Glycoside Hydrolase in Complex with Carbohydrates Reveals Insights into Its Mechanism. J.Biol.Chem. (2015)
- Release Date
- 2015-09-02
- Peptides
- ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A