SMTL ID : 5a7e.1

Crystallographic Structural Determination of a Trigonal Laccase from Coriolopsis Gallica (CgL) to 1.5 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(4-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: R.22, Q.23, N.54, T.56, M.57, H.153, L.154, A.155, V.158 Ligands: ACT.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.22 Hydrogen bonds: A:A.155

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(3-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 5 residues within 4Å: Chain A: A.324, N.326, S.382, P.384, N.433 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.326 Water bridges: A:L.325

1 x BGC- BGC: beta-D-glucopyranose-(1-2)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.3: 7 residues within 4Å: Chain A: A.1, T.37, N.39, Y.127, D.140, D.141, D.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.1, A:A.1, A:D.142 Water bridges: A:T.37

4 x CU: COPPER (II) ION(Non-covalent)

CU.4: 5 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, H.451 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.66, A:H.109, A:H.451 CU.5: 4 residues within 4Å: Chain A: H.64, H.66, H.397, H.399 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.397, H2O.11 CU.6: 5 residues within 4Å: Chain A: H.394, C.450, I.452, H.455, F.460 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.394, A:C.450, A:H.455 CU.7: 5 residues within 4Å: Chain A: H.111, H.397, H.399, F.447, H.449 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.111, A:H.399, A:H.449

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 5 residues within 4Å: Chain A: T.53, N.54, H.55, T.56 Ligands: NAG-NAG-BMA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.55, A:T.56, A:T.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De la Mora, E. et al., Metal Site Delocalization Observed in a Model Multicopper Oxidase: An Insight Into Water Release Mechanism. To be Published

Release Date

2016-05-25

Peptides

CORIOLOPSIS GALLICA LACCASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CORIOLOPSIS GALLICA LACCASE