SMTL ID : 5a7f.1

Comparison of the structure and activity of glycosylated and aglycosylated Human Carboxylesterase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.59, T.61, S.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.59, A:T.61, A:S.62 NAG.4: 3 residues within 4Å: Chain B: N.59, T.61, S.62 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.59, B:T.61, B:S.62 NAG.7: 3 residues within 4Å: Chain C: N.59, T.61, S.62 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.59, C:T.61, C:S.62

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: A.216, K.217, N.218, L.219, F.220, H.322, V.324 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.218, A:L.219, A:F.220, A:F.220, A:F.220 Water bridges: A:H.322 Salt bridges: A:H.322 PO4.3: 7 residues within 4Å: Chain A: H.264, Q.268 Chain B: G.41, R.44, R.267, Q.268, K.269 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.268 Salt bridges: A:H.264, B:R.44 Water bridges: B:R.44, B:R.44, B:E.271 PO4.5: 7 residues within 4Å: Chain B: A.216, K.217, N.218, L.219, F.220, H.322, V.324 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.218, B:L.219, B:F.220, B:F.220, B:F.220 Water bridges: B:H.322 Salt bridges: B:H.322 PO4.6: 7 residues within 4Å: Chain B: H.264, Q.268 Chain C: G.41, R.44, R.267, Q.268, K.269 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Water bridges: C:R.44, C:R.44, C:E.271 Salt bridges: C:R.44, B:H.264 Hydrogen bonds: B:Q.268 PO4.8: 7 residues within 4Å: Chain C: A.216, K.217, N.218, L.219, F.220, H.322, V.324 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:N.218, C:L.219, C:F.220, C:F.220, C:F.220 Water bridges: C:H.322 Salt bridges: C:H.322 PO4.9: 7 residues within 4Å: Chain A: G.41, R.44, R.267, Q.268, K.269 Chain C: H.264, Q.268 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain A Hydrogen bonds: C:Q.268 Salt bridges: C:H.264, A:R.44 Water bridges: A:R.44, A:R.44, A:E.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arena De Souza, V. et al., Comparison of the Structure and Activity of Glycosylated and Aglycosylated Human Carboxylesterase 1. Plos One (2015)

Release Date

2016-01-13

Peptides

LIVER CARBOXYLESTERASE 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

LIVER CARBOXYLESTERASE 1

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