SMTL ID : 5a88.4 (3 other biounits)

Crystal structure of the riboflavin kinase module of FAD synthetase from Corynebacterium ammoniagenes in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: V.11, R.13, G.14, F.24, P.25, T.26, A.27, N.28, S.87, F.88, V.89, R.92, D.93, A.94, D.95, L.96, Y.97 Ligands: GOL.2, CA.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.14, A:T.26, A:N.28, A:V.89, A:V.89, A:D.93, A:A.94, A:D.95, A:L.96, A:Y.97 Water bridges: A:T.26, A:N.28, A:Y.97, A:Y.97

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.14, T.26, N.28 Ligands: ADP.1, CA.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.28

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: T.26, N.28 Ligands: ADP.1, GOL.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.26, A:T.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herguedas, B. et al., Structural Insights Into the Synthesis of Fmn in Prokaryotic Organisms. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-12-09

Peptides

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF

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