SMTL ID : 5a8e.1

thermostabilised beta1-adrenoceptor with rationally designed inverse agonist 7-methylcyanopindolol bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: C.162, D.165, C.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.163 NA.2: 2 residues within 4Å: Chain A: D.57, S.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.98, A:S.98 Water bridges: A:S.278

1 x XTK: 4-[(2S)-3-(tert-butylamino)-2-hydroxypropoxy]-7-methyl-1H-indole-2-carbonitrile(Non-covalent)

XTK.3: 17 residues within 4Å: Chain A: W.87, T.88, D.91, V.92, V.95, F.171, T.173, Y.177, A.178, S.181, S.185, W.245, F.248, F.249, N.252, N.271, Y.275 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.87, A:T.88, A:V.92, A:V.95, A:F.171, A:F.171 Hydrogen bonds: A:D.91, A:S.181, A:S.181, A:N.252, A:N.271, A:Y.275 pi-Stacking: A:F.249

1 x MHA: (CARBAMOYLMETHYL-CARBOXYMETHYL-AMINO)-ACETIC ACID(Non-covalent)

MHA.4: 3 residues within 4Å: Chain A: G.80, S.81, P.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.81, A:S.81 Water bridges: A:F.82

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.5: 10 residues within 4Å: Chain A: A.197, V.200, Y.201, I.208, R.209, H.228, L.231, K.232, G.235 Ligands: OLC.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.197, A:Y.201, A:I.208, A:H.228, A:L.231 OLC.6: 6 residues within 4Å: Chain A: K.229, K.232, G.235, G.239, T.242 Ligands: OLC.5 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.232 OLC.7: 4 residues within 4Å: Chain A: I.107, Y.110, F.195, V.196 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.107, A:Y.110, A:F.195, A:V.196 OLC.8: 12 residues within 4Å: Chain A: Q.43, T.44, L.45, T.46, R.109, A.112, I.113, Y.119, R.125, E.227, A.230, L.231 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.112, A:I.113, A:Y.119, A:E.227, A:L.231, A:L.231 Hydrogen bonds: A:Q.43, A:L.45, A:T.46, A:T.46 Salt bridges: A:R.109 OLC.9: 9 residues within 4Å: Chain A: P.146, W.151, D.154, N.174, R.175, A.176, Y.177, A.180, I.184 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.177, A:A.180, A:I.184 Hydrogen bonds: A:R.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, T. et al., Pharmacological Analysis and Structure Determination of 7-Methylcyanopindolol-Bound Beta1-Adrenergic Receptor. Mol.Pharmacol. (2015)

Release Date

2015-09-30

Peptides

BETA1 ADRENERGIC RECEPTOR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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BETA1 ADRENERGIC RECEPTOR