- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 2 residues within 4Å:- Chain A: V.178, V.181
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:V.178, A:V.181, H2O.10, H2O.11, H2O.11
MG.19: 3 residues within 4Å:- Chain B: V.178, V.181, V.223
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:V.178, B:V.181, H2O.26, H2O.27, H2O.27
MG.35: 3 residues within 4Å:- Chain C: V.178, V.181, V.223
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:V.178, C:V.181, H2O.41, H2O.41, H2O.42
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: E.125, R.128, W.129
5 PLIP interactions:5 interactions with chain A- Water bridges: A:E.125, A:E.125, A:E.125, A:W.129
- Salt bridges: A:R.128
SO4.20: 3 residues within 4Å:- Chain B: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.129
- Salt bridges: B:R.128
SO4.36: 3 residues within 4Å:- Chain C: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain C- Water bridges: C:E.125
- Salt bridges: C:R.128
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: H.107, H.142, M.156, Y.157, W.330, W.336
- Chain B: W.32
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.107, A:W.336
- Water bridges: A:Y.157
GOL.7: 4 residues within 4Å:- Chain A: P.37, R.169, F.173
- Chain C: M.193
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.169
- Water bridges: A:R.169
GOL.8: 6 residues within 4Å:- Chain A: T.47, Q.48, S.49, F.50, D.61, P.179
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.48, A:D.61
- Water bridges: A:K.46
GOL.21: 7 residues within 4Å:- Chain B: H.107, M.156, Y.157, W.330, W.336
- Chain C: W.32
- Ligands: PGE.26
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.107, B:W.336
GOL.22: 4 residues within 4Å:- Chain A: M.193
- Chain B: P.37, R.169, F.173
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.169
- Water bridges: B:R.169
GOL.37: 5 residues within 4Å:- Chain B: M.193
- Chain C: Y.36, P.37, R.169, F.173
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.169
- Water bridges: C:R.169
GOL.38: 6 residues within 4Å:- Chain A: W.32
- Chain C: H.107, M.156, Y.157, W.330, W.336
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:W.32, C:H.107, C:Y.157
- 22 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.9: 6 residues within 4Å:- Chain A: R.112, D.158, T.159, T.160, E.163
- Chain B: K.162
Ligand excluded by PLIPPGE.10: 3 residues within 4Å:- Chain A: G.194, N.195, R.200
Ligand excluded by PLIPPGE.11: 3 residues within 4Å:- Chain A: W.85, H.122, E.125
Ligand excluded by PLIPPGE.12: 6 residues within 4Å:- Chain A: Y.256, E.291, H.303, V.306, W.330, S.337
Ligand excluded by PLIPPGE.13: 3 residues within 4Å:- Chain A: P.334, D.335, D.343
Ligand excluded by PLIPPGE.14: 3 residues within 4Å:- Chain A: K.43, L.45, K.46
Ligand excluded by PLIPPGE.15: 3 residues within 4Å:- Chain A: Y.217, K.221, E.247
Ligand excluded by PLIPPGE.23: 6 residues within 4Å:- Chain B: R.112, D.158, T.159, T.160, E.163
- Chain C: K.162
Ligand excluded by PLIPPGE.24: 3 residues within 4Å:- Chain B: G.194, N.195, R.200
Ligand excluded by PLIPPGE.25: 3 residues within 4Å:- Chain B: W.85, H.122, E.125
Ligand excluded by PLIPPGE.26: 7 residues within 4Å:- Chain B: Y.256, E.291, H.303, V.306, W.330, S.337
- Ligands: GOL.21
Ligand excluded by PLIPPGE.27: 4 residues within 4Å:- Chain B: P.334, D.335, D.343, W.344
Ligand excluded by PLIPPGE.28: 5 residues within 4Å:- Chain A: R.82, D.335
- Chain B: D.30, W.32, D.33
Ligand excluded by PLIPPGE.29: 3 residues within 4Å:- Chain B: Y.217, K.221, E.247
Ligand excluded by PLIPPGE.30: 6 residues within 4Å:- Chain B: P.243, I.244, E.245, R.246, E.247, Y.285
Ligand excluded by PLIPPGE.31: 3 residues within 4Å:- Chain B: P.262, E.263, N.269
Ligand excluded by PLIPPGE.39: 6 residues within 4Å:- Chain A: K.162
- Chain C: R.112, D.158, T.159, T.160, E.163
Ligand excluded by PLIPPGE.40: 3 residues within 4Å:- Chain C: G.194, N.195, R.200
Ligand excluded by PLIPPGE.41: 4 residues within 4Å:- Chain C: W.85, Q.86, H.122, E.125
Ligand excluded by PLIPPGE.42: 6 residues within 4Å:- Chain C: Y.256, E.291, H.303, V.306, W.330, S.337
Ligand excluded by PLIPPGE.43: 5 residues within 4Å:- Chain A: W.32, D.33
- Chain C: K.78, R.82, D.335
Ligand excluded by PLIPPGE.44: 3 residues within 4Å:- Chain C: P.334, D.335, D.343
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-trimer
- Ligands
- 9 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 22 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C