- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: V.178, V.181
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:V.178, A:V.181, H2O.7, H2O.7, H2O.7
MG.14: 2 residues within 4Å:- Chain B: V.178, V.181
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:V.178, B:V.181, H2O.19, H2O.19, H2O.19
MG.25: 2 residues within 4Å:- Chain C: V.178, V.181
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:V.178, C:V.181, H2O.31, H2O.31, H2O.31
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain A- Water bridges: A:W.129
- Salt bridges: A:R.128
SO4.15: 3 residues within 4Å:- Chain B: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain B- Water bridges: B:W.129
- Salt bridges: B:R.128
SO4.26: 3 residues within 4Å:- Chain C: E.125, R.128, W.129
2 PLIP interactions:2 interactions with chain C- Water bridges: C:W.129
- Salt bridges: C:R.128
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: H.107, M.156, Y.157, W.330, W.336
- Chain B: W.32
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.107, A:Y.157
GOL.6: 5 residues within 4Å:- Chain A: D.30, W.32, D.33
- Chain C: R.82, D.335
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:W.32, C:R.82
GOL.16: 6 residues within 4Å:- Chain B: H.107, M.156, Y.157, W.330, W.336
- Chain C: W.32
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.107
GOL.17: 5 residues within 4Å:- Chain A: R.82, D.335
- Chain B: D.30, W.32, D.33
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:W.32, A:R.82
GOL.27: 6 residues within 4Å:- Chain A: W.32
- Chain C: H.107, M.156, Y.157, W.330, W.336
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.107
GOL.28: 5 residues within 4Å:- Chain B: R.82, D.335
- Chain C: D.30, W.32, D.33
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:R.82, C:W.32
- 15 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.7: 6 residues within 4Å:- Chain A: R.112, D.158, T.159, T.160, E.163
- Chain B: K.162
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.162, A:T.159
PGE.8: 6 residues within 4Å:- Chain A: Y.256, E.291, H.303, V.306, W.330, S.337
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.291
PGE.9: 2 residues within 4Å:- Chain A: G.194, R.200
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.200, A:R.200
- Water bridges: A:G.194, A:G.194, A:N.195
PGE.10: 2 residues within 4Å:- Chain A: R.169, F.173
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.169, A:R.169
PGE.11: 3 residues within 4Å:- Chain A: W.232, K.259, P.305
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.259, A:K.259
PGE.18: 6 residues within 4Å:- Chain B: R.112, D.158, T.159, T.160, E.163
- Chain C: K.162
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:K.162, B:T.159
PGE.19: 6 residues within 4Å:- Chain B: Y.256, E.291, H.303, V.306, W.330, S.337
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.256, B:E.291
PGE.20: 2 residues within 4Å:- Chain B: G.194, R.200
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.200, B:R.200
- Water bridges: B:G.194, B:G.194, B:N.195
PGE.21: 2 residues within 4Å:- Chain B: R.169, F.173
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.169, B:R.169
PGE.22: 3 residues within 4Å:- Chain B: W.232, K.259, P.305
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.259, B:K.259
PGE.29: 6 residues within 4Å:- Chain A: K.162
- Chain C: R.112, D.158, T.159, T.160, E.163
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:K.162, C:T.159
PGE.30: 6 residues within 4Å:- Chain C: Y.256, E.291, H.303, V.306, W.330, S.337
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.291
PGE.31: 2 residues within 4Å:- Chain C: G.194, R.200
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.200, C:R.200
- Water bridges: C:G.194, C:G.194, C:N.195
PGE.32: 2 residues within 4Å:- Chain C: R.169, F.173
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.169, C:R.169
PGE.33: 3 residues within 4Å:- Chain C: W.232, K.259, P.305
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.259, C:K.259
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 15 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lafond, M. et al., The Quaternary Structure of a Glycoside Hydrolase Dictates Specificity Towards Beta-Glucans. J.Biol.Chem. (2016)
- Release Date
- 2016-01-20
- Peptides
- PUTATIVE RETAINING B-GLYCOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A