SMTL ID : 5a9a.1

Crystal structure of Simulium ubiquitum CPV20 polyhedra

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-trimer

Ligands

3 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.1: 8 residues within 4Å: Chain A: R.78, H.79, H.95, H.96, E.98, L.99, F.100, E.101 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.100, A:E.101 Hydrogen bonds: A:F.100, A:E.101 Water bridges: A:R.78 Salt bridges: A:R.78, A:R.78, A:H.96 UTP.2: 8 residues within 4Å: Chain B: R.78, H.79, H.95, H.96, E.98, L.99, F.100, E.101 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.100, B:E.101 Hydrogen bonds: B:F.100, B:E.101 Water bridges: B:R.78 Salt bridges: B:R.78, B:R.78, B:H.96 UTP.3: 8 residues within 4Å: Chain C: R.78, H.79, H.95, H.96, E.98, L.99, F.100, E.101 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.100, C:E.101 Hydrogen bonds: C:H.95, C:F.100, C:E.101 Water bridges: C:R.78 Salt bridges: C:R.78, C:R.78, C:H.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ji, X. et al., Polyhedra Structures and the Evolution of the Insect Viruses. J.Struct.Biol. (2015)

Release Date

2015-09-02

Peptides

POLYHEDRIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

POLYHEDRIN