SMTL ID : 5a9h.1

Crystal structure of the extracellular domain of PepT2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: D.56, D.71, H.72, S.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.56, A:H.72, A:S.73 Water bridges: A:S.73 GOL.5: 4 residues within 4Å: Chain B: D.56, D.71, H.72, S.73 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.56, B:H.72, B:S.73 Water bridges: B:S.73

4 x CS: CESIUM ION(Non-covalent)

CS.2: 4 residues within 4Å: Chain A: H.44 Chain B: E.34, H.44 Ligands: CS.6 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.44, A:H.44, B:E.34, B:E.34, H2O.4 CS.4: 3 residues within 4Å: Chain A: H.58, H.69, D.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.58, A:H.69, A:D.71, A:D.71 CS.6: 4 residues within 4Å: Chain A: E.34, H.44 Chain B: H.44 Ligands: CS.2 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.44, B:H.44, A:E.34, A:E.34, H2O.8 CS.8: 3 residues within 4Å: Chain B: H.58, H.69, D.71 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.58, B:H.69, B:D.71, B:D.71

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: S.35, V.36, S.37, Q.40, N.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.37, A:S.37 ACT.7: 5 residues within 4Å: Chain B: S.35, V.36, S.37, Q.40, N.41 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.37, B:S.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beale, J.H. et al., Crystal Structures of the Extracellular Domain from Pept1 and Pept2 Provide Novel Insights Into Mammalian Peptide Transport. Structure (2015)

Release Date

2015-09-09

Peptides

SOLUTE CARRIER FAMILY 15 MEMBER 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SOLUTE CARRIER FAMILY 15 MEMBER 2

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