SMTL ID : 5aau.1

Optimization of a novel binding motif to to (E)-3-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H- pyrido(3,4-b)indol-1-yl)phenyl)acrylic acid (AZD9496), a potent and orally bioavailable selective estrogen receptor downregulator and antagonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x XBR: 3-(1-(4-CHLOROPHENYL)-3,4-DIHYDRO-1H-PYRIDO(3,4-B)INDOL-2(9H)-YL)PROPANOIC ACID(Non-covalent)

XBR.1: 18 residues within 4Å: Chain A: M.41, L.44, T.45, L.47, A.48, E.51, W.81, L.82, L.85, L.89, R.92, F.102, M.119, I.122, G.219, H.222, L.223, V.231 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.44, A:L.47, A:A.48, A:W.81, A:L.82, A:L.85, A:L.89, A:L.223, A:L.223 Salt bridges: A:H.222 pi-Stacking: A:F.102, A:F.102 Halogen bonds: A:V.231 XBR.2: 16 residues within 4Å: Chain B: L.44, T.45, L.47, A.48, W.81, L.85, M.86, L.89, R.92, F.102, M.119, I.122, G.219, H.222, L.223, V.231 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.47, B:A.48, B:W.81, B:L.85, B:L.89, B:L.223, B:L.223 Salt bridges: B:H.222 pi-Stacking: B:F.102, B:F.102 Halogen bonds: B:V.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Savi, C. et al., Optimization of a Novel Binding Motif to (E)-3-(3,5-Difluoro-4-((1R,3R)-2-(2-Fluoro-2-Methylpropyl)-3-Methyl-2, 3,4,9-Tetrahydro-1H-Pyrido[3,4-B]Indol-1-Yl)Phenyl)Acrylic Acid (Azd9496), a Potent and Orally Bioavailable Selective Estrogen Receptor Downregulator and Antagonist. J.Med.Chem. (2015)

Release Date

2015-10-14

Peptides

ESTROGEN RECEPTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ESTROGEN RECEPTOR