SMTL ID : 5abd.3 (2 other biounits)

CRYSTAL STRUCTURE OF VEGFR-1 DOMAIN 2 IN PRESENCE OF CU

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: I.14, H.16, H.92 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.16, A:H.92 CU.2: 1 residues within 4Å: Chain A: H.83 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.83 CU.3: 2 residues within 4Å: Chain A: G.1, R.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:R.2, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: E.6, Y.8, P.26, C.27, T.87, Y.89 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.89 Water bridges: A:E.6, A:Y.8

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: I.71, H.92, R.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.92, A:R.93 Salt bridges: A:R.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gaucher, J.-F. et al., Biophysical Studies of the Induced Dimerization of Human Vegf R Receptor 1 Binding Domain by Divalent Metals Competing with Vegf-A. Plos One (2016)

Release Date

2016-09-28

Peptides

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1

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