SMTL ID : 5abf.2 (1 other biounit)

Structure of GH84 with ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.42, A.43, E.71, D.74 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.42, A:E.71, H2O.1, H2O.1, H2O.1

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: S.353, R.357, H.359, L.360, E.385, H.386, W.508, N.556, N.558 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.386, A:N.556, A:N.558 Water bridges: A:E.385

1 x XRJ: 2-[(2S,3R,4R,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)-1-pentyl-pyrrolidin-2-yl]-N-methyl-ethanamide(Non-covalent)

XRJ.3: 19 residues within 4Å: Chain A: G.145, F.146, Y.147, K.176, D.252, D.253, C.288, Y.292, W.296, T.320, V.324, I.325, W.347, N.349, V.352, D.354, Y.355, N.382, H.443 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.296 Hydrogen bonds: A:G.145, A:Y.147, A:Y.147, A:K.176, A:D.252, A:N.349, A:N.382 Salt bridges: A:D.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bergeron-Brlek, M. et al., A Convenient Approach to Stereoisomeric Iminocyclitols: Generation of Potent Brain-Permeable Oga Inhibitors. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-11-18

Peptides

O-GLCNACASE BT_4395: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

O-GLCNACASE BT_4395