SMTL ID : 5acb.2 (1 other biounit)

Crystal Structure of the Human Cdk12-Cyclink Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 5I1: N-[4-[(3R)-3-[[5-chloranyl-4-(1H-indol-3-yl)pyrimidin-2-yl]amino]piperidin-1-yl]carbonylphenyl]-4-(dimethylamino)butanamide(Covalent)

5I1.1: 17 residues within 4Å: Chain B: I.21, E.23, V.29, A.42, K.44, F.101, E.102, Y.103, M.104, D.105, H.106, D.107, E.113, L.154, Q.325, C.327, E.329 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.21, B:V.29, B:V.29, B:V.29, B:Q.325 Hydrogen bonds: B:K.44, B:K.44, B:M.104, B:M.104, B:C.327 Salt bridges: B:E.113, B:E.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, T. et al., Covalent Targeting of Remote Cysteine Residues to Develop Cdk12 and Cdk13 Inhibitors. Nat.Chem.Biol. (2016)

Release Date

2016-06-15

Peptides

CYCLIN-K: A
CYCLIN-DEPENDENT KINASE 12: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

CYCLIN-K

CYCLIN-DEPENDENT KINASE 12

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