SMTL ID : 5acm.1 (1 other biounit)

Mcg immunoglobulin variable domain with methylene blue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x MBT: 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM(Non-covalent)

MBT.1: 6 residues within 4Å: Chain A: Y.33, Y.35, Y.94, D.98, F.100 Ligands: SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.98, A:F.100, A:F.100 pi-Stacking: A:Y.35, A:Y.94

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.35, S.37, Y.39, S.92, F.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.35, A:S.37, A:Y.39, A:S.92 Water bridges: A:Y.39 SO4.3: 4 residues within 4Å: Chain A: Y.33, N.34, Y.35 Ligands: MBT.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.34, A:N.34 Water bridges: A:G.32, A:N.34 SO4.4: 3 residues within 4Å: Chain A: P.62, R.64, Q.82 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.82 Water bridges: A:D.63 Salt bridges: A:R.64 SO4.5: 2 residues within 4Å: Chain A: A.4, T.104 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.4, A:A.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Inhibition by small-molecule ligands of formation of amyloid fibrils of an immunoglobulin light chain variable domain. Elife (2015)

Release Date

2015-12-02

Peptides

MCG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MCG

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