SMTL ID : 5ade.1

Structure of rat neuronal nitric oxide synthase M336V D597N mutant heme domain in complex with 7-((4-Chloro-3-((methylamino)methyl) phenoxy)methyl)quinolin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 20 residues within 4Å: Chain A: W.113, A.116, R.118, C.119, V.120, G.121, S.161, M.274, F.288, S.289, G.290, W.291, M.293, E.296, V.353, F.408, Y.410 Ligands: H4B.2, XEB.3, ACT.4 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:W.113, A:W.113, A:A.116, A:R.118, A:V.120, A:F.288, A:F.288, A:W.291, A:W.291, A:E.296, A:V.353, A:F.408, A:F.408, A:F.408 Hydrogen bonds: A:Y.410 Water bridges: A:R.300 Salt bridges: A:R.118 pi-Stacking: A:W.113 Metal complexes: A:C.119 HEM.6: 20 residues within 4Å: Chain B: W.113, A.116, R.118, C.119, V.120, S.161, M.274, F.288, S.289, G.290, W.291, M.293, E.296, V.353, W.382, F.408, Y.410 Ligands: H4B.7, XEB.8, ACT.9 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:W.113, B:W.113, B:W.113, B:A.116, B:R.118, B:V.120, B:F.288, B:F.288, B:F.288, B:W.291, B:E.296, B:V.353, B:F.408, B:F.408 Water bridges: B:R.300 Salt bridges: B:R.118 pi-Stacking: B:W.113 Metal complexes: B:C.119

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 12 residues within 4Å: Chain A: S.38, V.40, R.300, V.381, W.382 Chain B: W.380, F.395, H.396, Q.397, E.398 Ligands: HEM.1, XEB.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.300, A:V.381, A:W.382 pi-Stacking: A:W.382, A:W.382 H4B.7: 11 residues within 4Å: Chain A: W.380, F.395, H.396, Q.397, E.398 Chain B: S.38, V.40, R.300, V.381, W.382 Ligands: HEM.6 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.40, A:E.398 Hydrogen bonds: B:R.300, B:V.381, B:W.382 Water bridges: B:G.37, B:S.38 pi-Stacking: B:W.382, B:W.382

2 x XEB: 7-[[4-chloranyl-3-(methylaminomethyl)phenoxy]methyl]quinolin-2-amine(Non-covalent)

XEB.3: 11 residues within 4Å: Chain A: V.40, P.269, V.271, F.288, W.291, Y.292, E.296, W.382, Y.410 Ligands: HEM.1, H4B.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.271, A:F.288, A:Y.410 Hydrogen bonds: A:E.296 pi-Stacking: A:W.382 XEB.8: 11 residues within 4Å: Chain B: V.40, L.41, P.269, V.271, F.288, W.291, Y.292, E.296, W.382, Y.410 Ligands: HEM.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.271, B:F.288 Hydrogen bonds: B:E.296 pi-Stacking: B:W.382

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: I.123, W.291, V.353, S.361 Ligands: HEM.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.291 Hydrogen bonds: A:W.291, A:S.361 ACT.9: 3 residues within 4Å: Chain B: Q.124, W.291 Ligands: HEM.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.291 Hydrogen bonds: B:Q.124, B:W.291 Water bridges: B:S.361, B:S.361

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: C.30, C.35, M.36 Chain B: C.30, C.35 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.30, B:C.35, A:C.30, A:C.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cinelli, M.A. et al., Phenyl Ether- and Aniline-Containing 2-Aminoquinolines as Potent and Selective Inhibitors of Neuronal Nitric Oxide Synthase. J.Med.Chem. (2015)

Release Date

2015-10-28

Peptides

NITRIC OXIDE SYNTHASE, BRAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NITRIC OXIDE SYNTHASE, BRAIN

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