SMTL ID : 5ae5.1

Structures of inactive and activated DntR provide conclusive evidence for the mechanism of action of LysR transcription factors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-tetramer

Ligands

18 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: Q.158, T.159, F.161, F.162, A.279 Ligand excluded by PLIP GOL.2: 3 residues within 4Å: Chain A: A.279, N.282, R.283 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: D.105, R.132, H.228 Chain B: D.105, R.132, H.228 Ligand excluded by PLIP GOL.4: 7 residues within 4Å: Chain A: G.198, V.199, H.206, V.209, D.210, R.220, T.244 Ligand excluded by PLIP GOL.5: 3 residues within 4Å: Chain A: V.251, R.252, V.255 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: M.116, A.120 Chain B: E.195, R.223, T.239, D.240, L.241 Ligand excluded by PLIP GOL.7: 11 residues within 4Å: Chain A: M.109, I.230, F.257 Chain B: M.109, F.229, I.230, G.233, P.234, F.249, C.253, F.257 Ligand excluded by PLIP GOL.8: 3 residues within 4Å: Chain B: W.277, N.282, R.291 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain B: S.89, F.90, P.285 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain C: Q.158, T.159, F.161, F.162, A.279 Ligand excluded by PLIP GOL.11: 3 residues within 4Å: Chain C: A.279, N.282, R.283 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain C: D.105, R.132, H.228 Chain D: D.105, R.132, H.228 Ligand excluded by PLIP GOL.13: 7 residues within 4Å: Chain C: G.198, V.199, H.206, V.209, D.210, R.220, T.244 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain C: V.251, R.252, V.255 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain C: M.116, A.120 Chain D: E.195, R.223, T.239, D.240, L.241 Ligand excluded by PLIP GOL.16: 11 residues within 4Å: Chain C: M.109, I.230, F.257 Chain D: M.109, F.229, I.230, G.233, P.234, F.249, C.253, F.257 Ligand excluded by PLIP GOL.17: 3 residues within 4Å: Chain D: W.277, N.282, R.291 Ligand excluded by PLIP GOL.18: 3 residues within 4Å: Chain D: S.89, F.90, P.285 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lerche, M. et al., The Solution Configurations of Inactive and Activated Dntr Have Implications for the Sliding Dimer Mechanism of Lysr Transcription Factors. Sci.Rep. (2016)

Release Date

2016-01-13

Peptides

LYSR-TYPE REGULATORY PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

LYSR-TYPE REGULATORY PROTEIN