SMTL ID : 5aec.1

Type II Baeyer-Villiger monooxygenase.The oxygenating constituent of 3,6-diketocamphane monooxygenase from CAM plasmid of Pseudomonas putida in complex with FMN.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x PIN: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)(Non-covalent)

PIN.1: 7 residues within 4Å: Chain A: A.111, Y.112, P.113, F.203, I.223, F.292, M.294 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.49 PIN.11: 10 residues within 4Å: Chain A: L.174 Chain B: A.111, Y.112, P.113, F.203, I.223, R.291, F.292, M.294 Ligands: GOL.15 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.291 Water bridges: B:Q.49

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: W.191, G.192, K.194 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.191 GOL.3: 7 residues within 4Å: Chain A: Q.97, D.187 Chain B: R.17, S.18, A.19, T.22, N.53 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.97, A:D.187, A:D.187, B:S.18, B:N.53 GOL.4: 1 residues within 4Å: Chain A: E.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.274 Water bridges: A:E.274, A:E.274 GOL.5: 5 residues within 4Å: Chain A: D.39, K.72, F.104, E.197, K.219 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.72, A:K.72, A:E.197, A:K.219 Water bridges: A:D.39, A:S.40, A:S.40, A:S.40, A:T.343, A:T.343 GOL.6: 8 residues within 4Å: Chain A: I.223, F.224, H.257, T.258, W.289, Y.298, F.319, E.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.258, A:T.258, A:E.347 Water bridges: A:V.318, A:E.347 GOL.12: 9 residues within 4Å: Chain A: R.17, S.18, A.19, T.22, N.53 Chain B: Q.97, A.186, D.187, F.188 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.18, A:T.22, A:N.53, B:Q.97, B:D.187 GOL.13: 5 residues within 4Å: Chain B: D.39, K.72, F.104, E.197, K.219 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.39, B:K.72, B:E.197, B:K.219 Water bridges: B:D.39, B:D.39, B:S.40, B:S.40 GOL.14: 8 residues within 4Å: Chain B: I.223, F.224, H.257, T.258, W.289, Y.298, F.319, E.347 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.258, B:T.258 Water bridges: B:E.347 GOL.15: 8 residues within 4Å: Chain B: Y.12, E.52, Y.112, L.285, W.289, M.294 Ligands: PIN.11, CL.21 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.12, B:E.52, B:E.52, B:Y.112, B:W.289 GOL.16: 7 residues within 4Å: Chain B: G.108, A.109, N.140, V.143, S.209, L.212 Ligands: SO4.19 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.109, B:N.140, B:S.209 Water bridges: B:S.209, B:S.209 GOL.17: 3 residues within 4Å: Chain B: N.138, N.140, R.144 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.138, B:N.140, B:R.144, B:R.144 Water bridges: B:N.138, B:N.140, B:R.144

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 6 residues within 4Å: Chain A: L.79, G.108, A.109, G.110, A.111, T.201 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.109, A:G.110, A:T.201 Water bridges: A:G.110, A:A.111, A:T.201, A:T.201 SO4.8: 6 residues within 4Å: Chain A: G.202, F.203, S.204, S.207, P.208, S.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.203, A:S.204, A:S.209, A:S.209 SO4.18: 7 residues within 4Å: Chain B: T.201, G.202, F.203, S.204, S.207, P.208, S.209 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.203, B:S.204, B:S.204, B:S.209, B:S.209, B:S.209 SO4.19: 6 residues within 4Å: Chain B: G.108, A.109, G.110, A.111, T.201 Ligands: GOL.16 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.109, B:G.110 Water bridges: B:A.111, B:T.201, B:S.209

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 2 residues within 4Å: Chain A: H.46, Y.112 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain A: T.247 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain B: N.217, H.246, T.247 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain B: H.46, Y.112 Ligands: GOL.15 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isupov, M.N. et al., The Oxygenating Constituent of 3,6-Diketocamphane Monooxygenase from the Cam Plasmid of Pseudomonas Putida: The First Crystal Structure of a Type II Baeyer-Villiger Monooxygenase. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-09-09

Peptides

3,6-DIKETOCAMPHANE 1,6 MONOOXYGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3,6-DIKETOCAMPHANE 1,6 MONOOXYGENASE

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