SMTL ID : 5aen.1

Structure of human Leukotriene A4 hydrolase in complex with inhibitor dimethyl(2- (4-phenoxyphenoxy)ethyl)amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x DP8: N,N-dimethyl-2-(4-phenoxyphenoxy)ethanamine(Non-covalent)

DP8.1: 14 residues within 4Å: Chain A: Q.134, A.135, Y.265, G.267, M.268, W.309, F.312, V.365, L.367, P.372, D.373, A.375, Y.376, Y.381 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Q.134, A:A.135, A:W.309, A:F.312, A:F.312, A:V.365, A:L.367, A:P.372, A:Y.376 Water bridges: A:Q.134 pi-Cation interactions: A:Y.265

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.293, H.297, E.316, Y.381 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.293, A:H.297, A:E.316, A:E.316, H2O.14

4 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 1 residues within 4Å: Chain A: D.479 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.479, A:D.479, H2O.20 YB.4: 1 residues within 4Å: Chain A: E.119 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.119, A:E.119 YB.5: 2 residues within 4Å: Chain A: D.420, D.424 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.424, H2O.18, H2O.18, H2O.18, H2O.18 YB.6: 1 residues within 4Å: Chain A: D.45 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.45, A:D.45, H2O.3, H2O.3, H2O.24

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.7: 8 residues within 4Å: Chain A: G.342, G.345, E.346, N.349, E.499, A.502, Q.503, Q.506 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.346, A:N.349, A:E.499 IMD.8: 8 residues within 4Å: Chain A: S.286, L.287, S.494, H.495, N.498, N.529, E.531, I.532 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.286, A:N.498, A:N.529 Water bridges: A:N.289, A:H.495

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moser, D. et al., Peng: A Neural Gas-Based Approach for Pharmacophore Elucidation. Method Design, Validation and Virtual Screening for Novel Ligands of Lta4H. J.Chem.Inf.Model. (2015)

Release Date

2015-02-11

Peptides

LEUKOTRIENE A-4 HYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LEUKOTRIENE A-4 HYDROLASE

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