SMTL ID : 5af4.1 (3 other biounits)

Structure of Lys33-linked diUb

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.42, R.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.42, A:R.72 Water bridges: A:R.72 GOL.3: 4 residues within 4Å: Chain B: L.8, I.44, G.47, H.68 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.47 GOL.4: 3 residues within 4Å: Chain B: K.6, T.66, H.68 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.6, B:H.68 Water bridges: B:A.46, B:T.66

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.72, R.74 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.72, A:R.74 SO4.5: 5 residues within 4Å: Chain A: R.11 Chain B: R.42, Q.49, R.72, R.74 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.74 Salt bridges: B:R.42, B:R.72, A:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, M.A. et al., Assembly and Specific Recognition of K29- and K33-Linked Polyubiquitin. Mol.Cell (2015)

Release Date

2015-03-25

Peptides

UBIQUITIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UBIQUITIN

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