SMTL ID : 5afw.1

Assembly of methylated LSD1 and CHD1 drives AR-dependent transcription and translocation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: K.52, W.56, S.57, E.151, C.152, S.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.52, A:K.52 Water bridges: A:G.55 EDO.2: 3 residues within 4Å: Chain A: H.128, W.154 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.128, A:H.128 EDO.3: 5 residues within 4Å: Chain A: S.129, Q.131, K.132, S.133, D.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.129, A:D.139 EDO.4: 9 residues within 4Å: Chain A: G.55, W.56, S.57, H.60, S.153, W.154, E.155 Chain B: S.4, R.5 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.5, B:R.5, A:S.57, A:S.153, A:S.153 Water bridges: A:D.156 EDO.5: 3 residues within 4Å: Chain A: I.13, P.44, G.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.16, A:G.45 EDO.6: 5 residues within 4Å: Chain A: T.23, I.25, L.50, N.61, Q.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.120 Water bridges: A:I.25, A:N.61 EDO.7: 4 residues within 4Å: Chain A: S.129, N.130, Q.131 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.130, A:N.130, A:Q.131, A:Q.131 EDO.8: 4 residues within 4Å: Chain A: R.12, D.33, N.35, W.63 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.12, A:D.33, A:N.35 Water bridges: A:R.12 EDO.9: 4 residues within 4Å: Chain A: E.29, A.30, D.31, G.32 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.29 Water bridges: A:A.30, A:D.31

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 2 residues within 4Å: Chain A: A.134, A.135 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: A.135, G.136, Y.137 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: Y.171 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metzger, E. et al., Assembly of Methylated Kdm1A and Chd1 Drives Androgen Receptor-Dependent Transcription and Translocation. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-01-13

Peptides

CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1: A
LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1

LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A