SMTL ID : 5ag8.1 (1 other biounit)

CRYSTAL STRUCTURE OF A MUTANT (665I6H) OF THE C-TERMINAL DOMAIN OF RGPB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.138, N.139 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.138, A:K.138, A:K.138 Salt bridges: A:K.138 SO4.2: 2 residues within 4Å: Chain A: N.139, R.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.138, A:N.139 Salt bridges: A:R.140 SO4.3: 6 residues within 4Å: Chain A: V.86, E.87, G.88, R.153, A.155, T.160 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.88, A:T.160 Water bridges: A:K.85, A:V.86 Salt bridges: A:R.153

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: P.14, A.15, N.16 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.15, A:N.16, A:N.16 Water bridges: A:A.13, A:K.82 GOL.5: 3 residues within 4Å: Chain A: D.128, N.130, R.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.128, A:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Diego, I. et al., The Outer-Membrane Export Signal of Porphyromonas Gingivalis Type Ix Secretion System (T9Ss) is a Conserved C-Terminal Beta-Sandwich Domain. Sci.Rep. (2016)

Release Date

2016-04-06

Peptides

GINGIPAIN R2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GINGIPAIN R2

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