SMTL ID : 5agr.1

Crystal structure of the LeuRS editing domain of Mycobacterium tuberculosis in complex with the adduct (S)-3-(Aminomethyl)-7-ethoxybenzo[c][1,2]oxaborol-1(3H)-ol-AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x MET: METHIONINE(Non-functional Binders)

MET.1: 1 residues within 4Å: Ligands: LEU.2 No protein-ligand interaction detected (PLIP)

1 x LEU: LEUCINE(Non-functional Binders)

LEU.2: 1 residues within 4Å: Ligands: MET.1 0 PLIP interactions:

1 x A52: 3-AMINOMETHYL-7-(ETHOXY)-3H-BENZO[C][1,2]OXABOROL-1-OL modified adenosine(Non-covalent)

A52.3: 15 residues within 4Å: Chain A: F.54, T.55, T.56, R.57, Y.149, V.150, L.151, Y.154, I.159, M.160, V.162, H.165, D.166, R.168, D.169 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:R.57, A:R.57, A:D.166 Hydrogen bonds: A:T.56, A:L.151, A:L.151, A:Y.154, A:Y.154, A:R.168, A:R.168, A:D.169 Water bridges: A:T.56, A:Y.154, A:T.156

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: D.50, I.51, E.52, H.73, L.75, T.156, A.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.52, A:T.156 Water bridges: A:E.52, A:E.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palencia, A. et al., Discovery of Novel Oral Protein Synthesis Inhibitors of Mycobacterium Tuberculosis that Target Leucyl-tRNA Synthetase. Antimicrob.Agents Chemother. (2016)

Release Date

2016-03-02

Peptides

LEUCINE--TRNA LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LEUCINE--TRNA LIGASE

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