SMTL ID : 5agt.1

Crystal structure of the LeuRS editing domain of Mycobacterium tuberculosis in complex with the adduct (S)-3-(Aminomethyl)-4-chloro-7-ethoxybenzo[c][1,2]oxaborol-1(3H)-ol-AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x MET: METHIONINE(Non-functional Binders)

MET.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x A2H: 4-Chloro-3-aminomethyl-7-[ethoxy]-3H-benzo[C][1,2]oxaborol-1-ol modified adenosine(Non-covalent)

A2H.2: 16 residues within 4Å: Chain A: F.54, T.55, T.56, R.57, T.60, Y.149, V.150, L.151, Y.154, I.159, M.160, V.162, H.165, D.166, R.168, D.169 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.57, A:D.166 Hydrogen bonds: A:T.56, A:L.151, A:L.151, A:Y.154, A:Y.154, A:R.168, A:R.168, A:D.169 Water bridges: A:T.56, A:T.156

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: T.65, E.140, P.141, V.142, P.143, P.179 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palencia, A. et al., Discovery of Novel Oral Protein Synthesis Inhibitors of Mycobacterium Tuberculosis that Target Leucyl-tRNA Synthetase. Antimicrob.Agents Chemother. (2016)

Release Date

2016-03-02

Peptides

LEUCINE--TRNA LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LEUCINE--TRNA LIGASE

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