SMTL ID : 5ahr.1

Crystal structure of human DNA cross-link repair 1A, crystal form B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.35, H.37, H.96, D.118 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.35, A:H.37, A:H.96, A:D.118, H2O.2, H2O.2 ZN.3: 4 residues within 4Å: Chain B: H.35, H.37, H.96, D.118 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.35, B:H.37, B:H.96, B:D.118, H2O.9, H2O.9

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: L.130, Q.133, V.135, W.309, L.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.133, A:V.135, A:W.309 EDO.4: 5 residues within 4Å: Chain B: L.130, Q.133, V.135, W.309, L.310 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.133, B:V.135, B:W.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allerston, C.K. et al., The Structures of the Snm1A and Snm1B/Apollo Nuclease Domains Reveal a Potential Basis for Their Distinct DNA Processing Activities. Nucleic Acids Res. (2015)

Release Date

2015-02-18

Peptides

DNA CROSS-LINK REPAIR 1A PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DNA CROSS-LINK REPAIR 1A PROTEIN