SMTL ID : 5ahu.1

T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-1326

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-2-2-mer

Ligands

2 x G76: [2-(1-heptyl-1H-imidazol-3-ium-3-yl)ethane-1,1-diyl]bis(phosphonate)(Non-covalent)

G76.1: 19 residues within 4Å: Chain B: Y.26, L.27, D.30, M.33, D.34, R.39, T.95, A.96, Q.99, K.139, T.140, Y.143, D.182, K.196 Chain D: N.58, L.61 Ligands: MG.2, MG.3, MG.4 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:Y.26, B:Y.26, B:Y.26, B:T.95, B:A.96, B:Q.99, D:L.61 Hydrogen bonds: B:R.39, B:R.39, B:Q.179 Water bridges: B:S.36, B:S.36, B:K.139 pi-Cation interactions: B:K.139 G76.5: 18 residues within 4Å: Chain B: L.61 Chain D: Y.26, L.27, D.30, M.33, D.34, R.39, T.95, A.96, Q.99, K.139, T.140, Q.179, D.182, K.196 Ligands: MG.6, MG.7, MG.8 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:Y.26, D:Y.26, D:T.95, D:A.96, D:Q.99, B:L.61 Hydrogen bonds: D:D.34, D:R.39, D:R.39, D:K.139, D:Q.179

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain B: D.30, D.34, Q.99, D.102, K.205 Ligands: G76.1, MG.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.30, B:D.34, B:D.34, H2O.2, H2O.2 MG.3: 4 residues within 4Å: Chain B: D.30, D.34 Ligands: G76.1, MG.2 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.30, B:D.34, H2O.2 MG.4: 4 residues within 4Å: Chain B: D.182, D.186, D.200 Ligands: G76.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.182 MG.6: 5 residues within 4Å: Chain D: D.30, D.31, D.34, S.36 Ligands: G76.5 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.30, D:D.34 MG.7: 4 residues within 4Å: Chain D: D.182, D.186, D.200 Ligands: G76.5 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.182, H2O.6 MG.8: 5 residues within 4Å: Chain D: D.30, D.34, Q.99, D.102 Ligands: G76.5 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.30, D:D.34, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G. et al., Inhibition of Trypanosoma Brucei Cell Growth by Lipophilic Bisphosphonates: An in Vitro and in Vivo Investigation. Antimicrob.Agents Chemother. (2015)

Release Date

2015-10-28

Peptides

FARNESYL PYROPHOSPHATE SYNTHASE, PUTATIVE: AC
FARNESYL PYROPHOSPHATE SYNTHASE: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

FARNESYL PYROPHOSPHATE SYNTHASE, PUTATIVE

FARNESYL PYROPHOSPHATE SYNTHASE