SMTL ID : 5aij.1

P. aeruginosa SdsA hexagonal polymorph

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.169, D.173, H.174, E.299, H.344 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.173, A:H.174, A:E.299, A:H.344, H2O.8 ZN.2: 6 residues within 4Å: Chain A: H.169, H.171, H.174, E.280, E.299 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.169, A:H.171, A:E.280, A:E.299, H2O.8 ZN.6: 6 residues within 4Å: Chain B: H.169, D.173, H.174, E.299, H.344 Ligands: ZN.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.173, B:H.174, B:E.299, B:H.344, H2O.30 ZN.7: 6 residues within 4Å: Chain B: H.169, H.171, H.174, E.280, E.299 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.169, B:H.171, B:E.280, B:E.299, H2O.30

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: E.260, G.261, E.262, D.263, T.272, F.273, Q.274, R.332 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.262, A:D.263, A:F.273, A:R.332, A:R.332 GOL.4: 10 residues within 4Å: Chain A: Q.378, G.379, V.380, Q.384, R.388 Chain B: F.477, D.648, T.651, P.652, A.653 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.378, A:G.379, A:Q.384, A:R.388, A:R.388, B:T.651 Water bridges: B:D.648, B:A.653 GOL.5: 6 residues within 4Å: Chain A: V.37, E.40, L.41, D.396, Q.397, R.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.40, A:Q.397, A:R.402 GOL.8: 8 residues within 4Å: Chain B: E.260, G.261, E.262, D.263, T.272, F.273, Q.274, R.332 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.262, B:D.263, B:F.273, B:R.332, B:R.332 GOL.9: 10 residues within 4Å: Chain A: F.477, D.648, T.651, P.652, A.653 Chain B: Q.378, G.379, V.380, Q.384, R.388 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:T.651, B:Q.378, B:G.379, B:Q.384, B:R.388, B:R.388 Water bridges: A:D.648, A:A.653 GOL.10: 6 residues within 4Å: Chain B: V.37, E.40, L.41, D.396, Q.397, R.402 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.40, B:E.40, B:Q.397, B:R.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De La Mora, E. et al., Sdsa Polymorph Isolation and Improvement of Their Crystal Quality Using Nonconventional Crystallization Techniques. J.Appl.Crystallogr. (2015)

Release Date

2015-10-07

Peptides

ALKYL SULFATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ALKYL SULFATASE

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