SMTL ID : 5aji.1

MscS D67R1 high resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-heptamer

Ligands

2 x OCT: N-OCTANE(Non-covalent)(Non-functional Binders)

OCT.1: 1 residues within 4Å: Chain A: M.126 No protein-ligand interaction detected (PLIP) OCT.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

10 x HEX: HEXANE(Non-covalent)

HEX.2: 3 residues within 4Å: Chain A: V.65, F.68 Chain B: L.111 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.65, A:F.68, B:L.111 HEX.3: 2 residues within 4Å: Chain B: L.123, M.126 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.123 HEX.4: 2 residues within 4Å: Chain B: V.65, F.68 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.65, B:F.68 HEX.6: 3 residues within 4Å: Chain C: V.122, M.126 Chain D: L.111 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:L.111, C:V.122 HEX.7: 2 residues within 4Å: Chain C: V.65, F.68 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.68 HEX.9: 4 residues within 4Å: Chain D: V.65, F.68, L.69 Chain E: L.111 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:V.65, D:F.68, D:L.69, E:L.111 HEX.11: 3 residues within 4Å: Chain E: L.123, M.126 Ligands: HEX.12 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.123 HEX.12: 4 residues within 4Å: Chain E: V.65, L.69 Chain F: L.111 Ligands: HEX.11 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrophobic interactions: F:L.111, E:V.65, E:L.69 HEX.13: 2 residues within 4Å: Chain F: L.123 Chain G: L.111 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:L.123, G:L.111 HEX.14: 2 residues within 4Å: Chain F: V.65, F.68 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:V.65

3 x D10: DECANE(Non-covalent)

D10.5: 1 residues within 4Å: Chain C: K.60 No protein-ligand interaction detected (PLIP) D10.8: 2 residues within 4Å: Chain D: K.60, M.126 No protein-ligand interaction detected (PLIP) D10.15: 1 residues within 4Å: Chain G: K.60 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pliotas, C. et al., The Role of Lipids in Mechanosensation. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-07-08

Peptides

SMALL-CONDUCTANCE MECHANOSENSITIVE CHANNEL: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Membrane

We predict this structure to be a membrane protein.
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SMALL-CONDUCTANCE MECHANOSENSITIVE CHANNEL

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