SMTL ID : 5ajj.1

Crystal structure of variola virus virulence factor F1L in complex with human Bid BH3 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.50, K.54 Chain C: Y.61, I.72, D.73, N.76 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:Y.50, A:K.54 Water bridges: A:Y.50, A:Y.50, C:D.73, C:D.73 GOL.3: 6 residues within 4Å: Chain A: Y.61, I.72, D.73, N.76 Chain C: Y.50, K.54 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain C Water bridges: A:D.58, A:D.73, A:N.76, C:Y.50, C:Y.50 Hydrogen bonds: C:Y.50, C:K.54

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: R.56, L.57, L.60, I.145 Chain C: Q.49, Y.50, S.53, P.141 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.145 Salt bridges: A:R.56 ACT.4: 8 residues within 4Å: Chain A: Q.49, Y.50, S.53, P.141 Chain C: R.56, L.57, L.60, I.145 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.145 Salt bridges: C:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marshall, B. et al., Variola Virus F1L is a Bcl-2-Like Protein that Unlike its Vaccinia Virus Counterpart Inhibits Apoptosis Independent of Bim. Cell Death Dis. (2015)

Release Date

2015-03-25

Peptides

HOMOLOG OF VACCINIA VIRUS CDS F1L PUTATIVE: AC
BH3-INTERACTING DOMAIN DEATH AGONIST: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

HOMOLOG OF VACCINIA VIRUS CDS F1L PUTATIVE

BH3-INTERACTING DOMAIN DEATH AGONIST