SMTL ID : 5am8.1 (3 other biounits)

Crystal structure of the Angiotensin-1 converting enzyme N-domain in complex with amyloid-beta 4-10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ASP- SER- GLY: BETA-AMYLOID PROTEIN 42(Non-covalent)

ASP-SER-GLY.1: 13 residues within 4Å: Chain A: Q.259, H.331, A.332, T.358, H.361, E.362, F.435, K.489, H.491, Y.498, Y.501 Ligands: ZN.5, SO4.7 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.332, A:T.358 Hydrogen bonds: A:Q.259, A:E.362, A:K.489, A:K.489 Water bridges: A:H.361, A:Y.501, A:Y.501 Salt bridges: A:H.361

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 3 residues within 4Å: Chain A: T.478, N.480, T.482 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.478, A:T.482, A:T.482 Water bridges: A:T.478, A:N.480, A:N.480

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 5 residues within 4Å: Chain A: N.45, T.47, E.49, N.50, R.326 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA-FUL.4: 5 residues within 4Å: Chain A: N.416, E.522, G.523, P.524, Q.527 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.361, H.365, E.389 Ligands: ASP-SER-GLY.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.361, A:H.365, A:E.389, H2O.14, H2O.14

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: W.201, Y.202, P.385, P.497, I.499, R.500 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 7 residues within 4Å: Chain A: D.255, Q.259, S.260, E.262 Ligands: ASP-SER-GLY.1, ASP-SER-GLY.1, ASP-SER-GLY.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.259, A:S.260 Water bridges: A:D.255, A:D.255, A:S.260, A:S.260, A:S.260, A:T.358

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 4 residues within 4Å: Chain A: R.96, D.189, G.190, F.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.190 Water bridges: A:R.96 PEG.9: 1 residues within 4Å: Chain A: Y.465 No protein-ligand interaction detected (PLIP) PEG.10: 5 residues within 4Å: Chain A: S.39, S.333, A.334, W.335 Ligands: PEG.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.39 Water bridges: A:A.334 PEG.11: 6 residues within 4Å: Chain A: A.334, H.365, Y.369, H.388, E.389 Ligands: PEG.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.369 Water bridges: A:A.334, A:Y.369, A:G.382, A:R.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larmuth, K.M. et al., The Kinetic and Structural Characterisation of Amyloid-Beta Metabolism by Human Angiotensin-1- Converting Enzyme (Ace). FEBS J. (2016)

Release Date

2016-01-13

Peptides

ANGIOTENSIN-CONVERTING ENZYME: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

ANGIOTENSIN-CONVERTING ENZYME

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