- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2: 18 residues within 4Å:- Chain A: N.107, S.127, E.128, K.131, W.134
- Chain B: W.134, Q.137, I.138, D.155, Y.187, W.195, I.196, K.197, G.199, Y.200
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.22, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.22, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.22
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Water bridges: B:Y.187, B:S.136, B:S.136, B:Q.137, B:G.199, B:Y.200
- Hydrogen bonds: B:W.134, B:K.197, B:K.197, A:E.128, A:E.128, B:Q.137
NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.22: 18 residues within 4Å:- Chain A: W.134, Q.137, I.138, D.155, Y.187, W.195, I.196, K.197, G.199, Y.200
- Chain B: N.107, S.127, E.128, K.131, W.134
- Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2, NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Water bridges: A:Y.187, A:S.136, A:S.136, A:Q.137, A:G.199, A:Y.200
- Hydrogen bonds: A:W.134, A:K.197, A:K.197, B:E.128, B:E.128, A:Q.137
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: N.79, D.80, Q.97, W.105, F.145, D.146, R.220, D.221
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.79, A:W.105, A:D.146, A:D.146
GOL.20: 9 residues within 4Å:- Chain A: Q.86, G.90, S.116, D.117, F.118, V.383, E.384, R.387, E.463
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.86, A:G.90, A:E.463
- Water bridges: A:S.116, A:E.384, A:R.387
GOL.24: 8 residues within 4Å:- Chain B: N.79, D.80, Q.97, W.105, F.145, D.146, R.220, D.221
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.79, B:W.105, B:D.146, B:D.146
GOL.40: 9 residues within 4Å:- Chain B: Q.86, G.90, S.116, D.117, F.118, V.383, E.384, R.387, E.463
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.86, B:G.90, B:E.463
- Water bridges: B:S.116, B:E.384, B:R.387
- 30 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 3 residues within 4Å:- Chain A: N.52, T.54, L.55
Ligand excluded by PLIPNAG.6: 1 residues within 4Å:- Chain A: N.125
Ligand excluded by PLIPNAG.7: 3 residues within 4Å:- Chain A: N.175, T.214, N.215
Ligand excluded by PLIPNAG.8: 2 residues within 4Å:- Chain A: L.233, N.236
Ligand excluded by PLIPNAG.9: 2 residues within 4Å:- Chain A: I.240, N.242
Ligand excluded by PLIPNAG.10: 1 residues within 4Å:- Chain A: N.319
Ligand excluded by PLIPNAG.11: 7 residues within 4Å:- Chain A: E.213, Y.278, L.279, P.281, R.355, N.357, S.359
Ligand excluded by PLIPNAG.12: 4 residues within 4Å:- Chain A: P.429, F.435, N.444, G.448
Ligand excluded by PLIPNAG.13: 8 residues within 4Å:- Chain A: D.117, T.119, S.120, A.466, A.467, G.470, N.471, V.635
Ligand excluded by PLIPNAG.14: 3 residues within 4Å:- Chain A: M.481, N.483, S.485
Ligand excluded by PLIPNAG.15: 5 residues within 4Å:- Chain A: S.430, P.432, L.511, N.512, E.566
Ligand excluded by PLIPNAG.16: 6 residues within 4Å:- Chain A: E.293, D.534, S.537, N.539, L.559, K.561
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain A: T.545, K.551, N.555
Ligand excluded by PLIPNAG.18: 4 residues within 4Å:- Chain A: T.47, S.524, E.525, N.606
Ligand excluded by PLIPNAG.19: 5 residues within 4Å:- Chain A: N.58, A.59, T.60, N.644, S.646
Ligand excluded by PLIPNAG.25: 3 residues within 4Å:- Chain B: N.52, T.54, L.55
Ligand excluded by PLIPNAG.26: 1 residues within 4Å:- Chain B: N.125
Ligand excluded by PLIPNAG.27: 3 residues within 4Å:- Chain B: N.175, T.214, N.215
Ligand excluded by PLIPNAG.28: 2 residues within 4Å:- Chain B: L.233, N.236
Ligand excluded by PLIPNAG.29: 2 residues within 4Å:- Chain B: I.240, N.242
Ligand excluded by PLIPNAG.30: 1 residues within 4Å:- Chain B: N.319
Ligand excluded by PLIPNAG.31: 7 residues within 4Å:- Chain B: E.213, Y.278, L.279, P.281, R.355, N.357, S.359
Ligand excluded by PLIPNAG.32: 4 residues within 4Å:- Chain B: P.429, F.435, N.444, G.448
Ligand excluded by PLIPNAG.33: 8 residues within 4Å:- Chain B: D.117, T.119, S.120, A.466, A.467, G.470, N.471, V.635
Ligand excluded by PLIPNAG.34: 3 residues within 4Å:- Chain B: M.481, N.483, S.485
Ligand excluded by PLIPNAG.35: 5 residues within 4Å:- Chain B: S.430, P.432, L.511, N.512, E.566
Ligand excluded by PLIPNAG.36: 6 residues within 4Å:- Chain B: E.293, D.534, S.537, N.539, L.559, K.561
Ligand excluded by PLIPNAG.37: 3 residues within 4Å:- Chain B: T.545, K.551, N.555
Ligand excluded by PLIPNAG.38: 4 residues within 4Å:- Chain B: T.47, S.524, E.525, N.606
Ligand excluded by PLIPNAG.39: 5 residues within 4Å:- Chain B: N.58, A.59, T.60, N.644, S.646
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity. J.Biol.Chem. (2016)
- Release Date
- 2016-02-10
- Peptides
- BETA-FRUCTOFURANOSIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)
- 2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 30 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ramirez-Escudero, M. et al., Structural Analysis of Beta-Fructofuranosidase from Xanthophyllomyces Dendrorhous Reveals Unique Features and the Crucial Role of N-Glycosylation in Oligomerization and Activity. J.Biol.Chem. (2016)
- Release Date
- 2016-02-10
- Peptides
- BETA-FRUCTOFURANOSIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A