SMTL ID : 5aor.1 (1 other biounit)

Structure of MLE RNA ADP AlF4 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: L.384, N.408, G.410, C.411, G.412, K.413, T.414, T.415, R.452, S.723, T.725, D.727, R.771, V.772 Ligands: MG.2, ALF.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.410, A:G.410, A:C.411, A:G.412, A:K.413, A:T.414, A:T.415, A:T.725, A:R.771 Water bridges: A:T.414, A:R.452, A:R.452, A:S.723, A:S.723, A:T.725, A:R.771, A:R.771 Salt bridges: A:K.413, A:R.771, A:R.771 pi-Cation interactions: A:R.452, A:R.452

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.414, D.507, E.508 Ligands: ADP.1, ALF.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.414, H2O.4, H2O.4, H2O.4 MG.4: 3 residues within 4Å: Chain A: N.1088, D.1099, I.1100 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.1099, H2O.13

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.3: 11 residues within 4Å: Chain A: T.409, G.410, K.413, T.414, E.508, S.723, Q.764, R.768, R.771 Ligands: ADP.1, MG.2 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: E.804, E.865 Chain B: U.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.865

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prabu, J.R. et al., Structure of the RNA Helicase Mle Reveals the Molecular Mechanisms for Uridine Specificity and RNA-ATP Coupling. Mol.Cell (2015)

Release Date

2015-11-18

Peptides

DOSAGE COMPENSATION REGULATOR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DOSAGE COMPENSATION REGULATOR

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