SMTL ID : 5apa.1

Crystal structure of human aspartate beta-hydroxylase isoform a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: N.80, H.141, H.187 Ligands: LMR.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.141, A:H.187, H2O.3, H2O.4

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.2: 16 residues within 4Å: Chain A: E.79, W.87, S.130, M.132, H.141, R.150, H.152, I.164, W.173, F.181, H.187, V.189, R.197, I.199, I.201 Ligands: NI.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.87 Hydrogen bonds: A:W.87, A:S.130, A:R.150 Water bridges: A:E.79, A:D.183 Salt bridges: A:H.141, A:R.150, A:H.152, A:H.187, A:R.197

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: A.34, D.182, S.184, F.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.184, A:S.184 Water bridges: A:N.146, A:E.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, I. et al., Aspartate/asparagine-beta-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern. Nat Commun (2019)

Release Date

2015-09-23

Peptides

ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE