SMTL ID : 5ar0.1

HSP72 with adenosine-derived inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GB8: (2R,3R,4S,5R)-2-(6-amino-8-((quinolin-7-ylmethyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol(Non-covalent)

GB8.1: 15 residues within 4Å: Chain A: Y.20, N.40, G.206, G.207, G.235, E.273, K.276, R.277, S.280, G.344, S.345, R.347, I.348, D.371 Ligands: GOL.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.20 Hydrogen bonds: A:E.273, A:K.276, A:K.276, A:R.277, A:S.280 Water bridges: A:T.42, A:R.277, A:R.347, A:R.347 pi-Cation interactions: A:R.277

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: Y.20, Y.46, K.61, G.235, E.236, D.239, E.273, K.276 Ligands: GB8.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.20, A:Y.46, A:K.61, A:G.235, A:K.276 Water bridges: A:D.239 GOL.3: 6 residues within 4Å: Chain A: H.337, D.338, L.339, R.362, D.363, N.365 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.339, A:L.339, A:R.362, A:N.365 Water bridges: A:H.337, A:D.338 GOL.4: 5 residues within 4Å: Chain A: K.164, V.168, L.172, N.173, V.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.172, A:V.174

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: K.76, R.77, R.81, Y.154, T.231 No protein-ligand interaction detected (PLIP) DMS.6: 5 residues within 4Å: Chain A: I.33, I.34, A.35, R.41, Y.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.35

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: S.281, R.304 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheeseman, M.D. et al., Exploiting Protein Conformational Change to Optimize Adenosine-Derived Inhibitors of Hsp70. J.Med.Chem. (2016)

Release Date

2016-05-11

Peptides

HEAT SHOCK 70 KDA PROTEIN 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HEAT SHOCK 70 KDA PROTEIN 1A

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