SMTL ID : 5awt.1

Crystal structure of the SGIP1 mu homology domain in complex with an Eps15 fragment containing two DPF motifs (YDPFGGDPFKG)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.12, H.55 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.12, A:D.12, A:H.55 ZN.2: 2 residues within 4Å: Chain A: E.43, D.126 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.43, A:E.43, A:D.126, A:D.126, H2O.2 ZN.3: 1 residues within 4Å: Chain A: H.109 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.109, H2O.2 ZN.4: 2 residues within 4Å: Chain A: D.93, T.96 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.93 ZN.5: 2 residues within 4Å: Chain A: H.77, Q.131 No protein-ligand interaction detected (PLIP) ZN.6: 1 residues within 4Å: Chain A: D.212 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimada, A. et al., Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 mu homology domain. Sci Rep (2016)

Release Date

2016-07-06

Peptides

SH3-containing GRB2-like protein 3-interacting protein 1: A
Epidermal growth factor receptor substrate 15: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SH3-containing GRB2-like protein 3-interacting protein 1

Epidermal growth factor receptor substrate 15

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