SMTL ID : 5axs.1

Crystal structure of CdCat-Fn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-24-mer

Ligands

24 x 4LF: N-[2-[2,5-bis(oxidanylidene)pyrrol-1-yl]ethyl]-2,3-bis(oxidanyl)benzamide(Covalent)

4LF.1: 12 residues within 4Å: Chain A: A.115, S.118, C.119 Chain I: S.118, A.121, D.122, P.123 Ligands: CD.4, 4LF.41, CD.44, 4LF.81, CD.84 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain I Hydrogen bonds: A:S.118, I:S.118 Water bridges: A:S.118, I:S.118 pi-Stacking: A:H.114 Hydrophobic interactions: I:P.123 4LF.11: 12 residues within 4Å: Chain B: A.115, S.118, C.119 Chain L: S.118, A.121, D.122, P.123 Ligands: CD.14, 4LF.61, CD.64, 4LF.111, CD.114 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain L Hydrogen bonds: B:S.118, L:S.118 Water bridges: B:S.118, L:S.118 pi-Stacking: B:H.114 Hydrophobic interactions: L:P.123 4LF.21: 12 residues within 4Å: Chain C: A.115, S.118, C.119 Chain J: S.118, A.121, D.122, P.123 Ligands: CD.24, 4LF.71, CD.74, 4LF.91, CD.94 6 PLIP interactions: 3 interactions with chain J, 3 interactions with chain C Hydrophobic interactions: J:P.123 Hydrogen bonds: J:S.118, C:S.118 Water bridges: J:S.118, C:S.118 pi-Stacking: C:H.114 4LF.31: 12 residues within 4Å: Chain D: A.115, S.118, C.119 Chain K: S.118, A.121, D.122, P.123 Ligands: CD.34, 4LF.51, CD.54, 4LF.101, CD.104 6 PLIP interactions: 3 interactions with chain K, 3 interactions with chain D Hydrophobic interactions: K:P.123 Hydrogen bonds: K:S.118, D:S.118 Water bridges: K:S.118, D:S.118 pi-Stacking: D:H.114 4LF.41: 12 residues within 4Å: Chain A: S.118, A.121, D.122, P.123 Chain E: A.115, S.118, C.119 Ligands: 4LF.1, CD.4, CD.44, 4LF.81, CD.84 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain E Hydrophobic interactions: A:P.123 Hydrogen bonds: A:S.118, E:S.118 Water bridges: A:S.118, E:S.118 pi-Stacking: E:H.114 4LF.51: 12 residues within 4Å: Chain D: S.118, A.121, D.122, P.123 Chain F: A.115, S.118, C.119 Ligands: 4LF.31, CD.34, CD.54, 4LF.101, CD.104 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain F Hydrophobic interactions: D:P.123 Hydrogen bonds: D:S.118, F:S.118 Water bridges: D:S.118, F:S.118 pi-Stacking: F:H.114 4LF.61: 12 residues within 4Å: Chain B: S.118, A.121, D.122, P.123 Chain G: A.115, S.118, C.119 Ligands: 4LF.11, CD.14, CD.64, 4LF.111, CD.114 6 PLIP interactions: 3 interactions with chain G, 3 interactions with chain B Hydrogen bonds: G:S.118, B:S.118 Water bridges: G:S.118, B:S.118 pi-Stacking: G:H.114 Hydrophobic interactions: B:P.123 4LF.71: 12 residues within 4Å: Chain C: S.118, A.121, D.122, P.123 Chain H: A.115, S.118, C.119 Ligands: 4LF.21, CD.24, CD.74, 4LF.91, CD.94 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain H Hydrophobic interactions: C:P.123 Hydrogen bonds: C:S.118, H:S.118 Water bridges: C:S.118, H:S.118 pi-Stacking: H:H.114 4LF.81: 12 residues within 4Å: Chain E: S.118, A.121, D.122, P.123 Chain I: A.115, S.118, C.119 Ligands: 4LF.1, CD.4, 4LF.41, CD.44, CD.84 6 PLIP interactions: 3 interactions with chain E, 3 interactions with chain I Hydrophobic interactions: E:P.123 Hydrogen bonds: E:S.118, I:S.118 Water bridges: E:S.118, I:S.118 pi-Stacking: I:H.114 4LF.91: 12 residues within 4Å: Chain H: S.118, A.121, D.122, P.123 Chain J: A.115, S.118, C.119 Ligands: 4LF.21, CD.24, 4LF.71, CD.74, CD.94 6 PLIP interactions: 3 interactions with chain J, 3 interactions with chain H Hydrogen bonds: J:S.118, H:S.118 Water bridges: J:S.118, H:S.118 pi-Stacking: J:H.114 Hydrophobic interactions: H:P.123 4LF.101: 12 residues within 4Å: Chain F: S.118, A.121, D.122, P.123 Chain K: A.115, S.118, C.119 Ligands: 4LF.31, CD.34, 4LF.51, CD.54, CD.104 6 PLIP interactions: 3 interactions with chain K, 3 interactions with chain F Hydrogen bonds: K:S.118, F:S.118 Water bridges: K:S.118, F:S.118 pi-Stacking: K:H.114 Hydrophobic interactions: F:P.123 4LF.111: 12 residues within 4Å: Chain G: S.118, A.121, D.122, P.123 Chain L: A.115, S.118, C.119 Ligands: 4LF.11, CD.14, 4LF.61, CD.64, CD.114 6 PLIP interactions: 3 interactions with chain G, 3 interactions with chain L Hydrophobic interactions: G:P.123 Hydrogen bonds: G:S.118, L:S.118 Water bridges: G:S.118, L:S.118 pi-Stacking: L:H.114 4LF.121: 12 residues within 4Å: Chain M: A.115, S.118, C.119 Chain U: S.118, A.121, D.122, P.123 Ligands: CD.124, 4LF.161, CD.164, 4LF.201, CD.204 6 PLIP interactions: 3 interactions with chain U, 3 interactions with chain M Hydrophobic interactions: U:P.123 Hydrogen bonds: U:S.118, M:S.118 Water bridges: U:S.118, M:S.118 pi-Stacking: M:H.114 4LF.131: 12 residues within 4Å: Chain N: A.115, S.118, C.119 Chain X: S.118, A.121, D.122, P.123 Ligands: CD.134, 4LF.181, CD.184, 4LF.231, CD.234 6 PLIP interactions: 3 interactions with chain N, 3 interactions with chain X Hydrogen bonds: N:S.118, X:S.118 Water bridges: N:S.118, X:S.118 pi-Stacking: N:H.114 Hydrophobic interactions: X:P.123 4LF.141: 12 residues within 4Å: Chain O: A.115, S.118, C.119 Chain V: S.118, A.121, D.122, P.123 Ligands: CD.144, 4LF.191, CD.194, 4LF.211, CD.214 6 PLIP interactions: 3 interactions with chain V, 3 interactions with chain O Hydrophobic interactions: V:P.123 Hydrogen bonds: V:S.118, O:S.118 Water bridges: V:S.118, O:S.118 pi-Stacking: O:H.114 4LF.151: 12 residues within 4Å: Chain P: A.115, S.118, C.119 Chain W: S.118, A.121, D.122, P.123 Ligands: CD.154, 4LF.171, CD.174, 4LF.221, CD.224 6 PLIP interactions: 3 interactions with chain W, 3 interactions with chain P Hydrophobic interactions: W:P.123 Hydrogen bonds: W:S.118, P:S.118 Water bridges: W:S.118, P:S.118 pi-Stacking: P:H.114 4LF.161: 12 residues within 4Å: Chain M: S.118, A.121, D.122, P.123 Chain Q: A.115, S.118, C.119 Ligands: 4LF.121, CD.124, CD.164, 4LF.201, CD.204 6 PLIP interactions: 3 interactions with chain Q, 3 interactions with chain M Hydrogen bonds: Q:S.118, M:S.118 Water bridges: Q:S.118, M:S.118 pi-Stacking: Q:H.114 Hydrophobic interactions: M:P.123 4LF.171: 12 residues within 4Å: Chain P: S.118, A.121, D.122, P.123 Chain R: A.115, S.118, C.119 Ligands: 4LF.151, CD.154, CD.174, 4LF.221, CD.224 6 PLIP interactions: 3 interactions with chain R, 3 interactions with chain P Hydrogen bonds: R:S.118, P:S.118 Water bridges: R:S.118, P:S.118 pi-Stacking: R:H.114 Hydrophobic interactions: P:P.123 4LF.181: 12 residues within 4Å: Chain N: S.118, A.121, D.122, P.123 Chain S: A.115, S.118, C.119 Ligands: 4LF.131, CD.134, CD.184, 4LF.231, CD.234 6 PLIP interactions: 3 interactions with chain N, 3 interactions with chain S Hydrophobic interactions: N:P.123 Hydrogen bonds: N:S.118, S:S.118 Water bridges: N:S.118, S:S.118 pi-Stacking: S:H.114 4LF.191: 12 residues within 4Å: Chain O: S.118, A.121, D.122, P.123 Chain T: A.115, S.118, C.119 Ligands: 4LF.141, CD.144, CD.194, 4LF.211, CD.214 6 PLIP interactions: 3 interactions with chain T, 3 interactions with chain O Hydrogen bonds: T:S.118, O:S.118 Water bridges: T:S.118, O:S.118 pi-Stacking: T:H.114 Hydrophobic interactions: O:P.123 4LF.201: 12 residues within 4Å: Chain Q: S.118, A.121, D.122, P.123 Chain U: A.115, S.118, C.119 Ligands: 4LF.121, CD.124, 4LF.161, CD.164, CD.204 6 PLIP interactions: 3 interactions with chain Q, 3 interactions with chain U Hydrophobic interactions: Q:P.123 Hydrogen bonds: Q:S.118, U:S.118 Water bridges: Q:S.118, U:S.118 pi-Stacking: U:H.114 4LF.211: 12 residues within 4Å: Chain T: S.118, A.121, D.122, P.123 Chain V: A.115, S.118, C.119 Ligands: 4LF.141, CD.144, 4LF.191, CD.194, CD.214 6 PLIP interactions: 3 interactions with chain V, 3 interactions with chain T Hydrogen bonds: V:S.118, T:S.118 Water bridges: V:S.118, T:S.118 pi-Stacking: V:H.114 Hydrophobic interactions: T:P.123 4LF.221: 12 residues within 4Å: Chain R: S.118, A.121, D.122, P.123 Chain W: A.115, S.118, C.119 Ligands: 4LF.151, CD.154, 4LF.171, CD.174, CD.224 6 PLIP interactions: 3 interactions with chain W, 3 interactions with chain R Hydrogen bonds: W:S.118, R:S.118 Water bridges: W:S.118, R:S.118 pi-Stacking: W:H.114 Hydrophobic interactions: R:P.123 4LF.231: 12 residues within 4Å: Chain S: S.118, A.121, D.122, P.123 Chain X: A.115, S.118, C.119 Ligands: 4LF.131, CD.134, 4LF.181, CD.184, CD.234 6 PLIP interactions: 3 interactions with chain S, 3 interactions with chain X Hydrophobic interactions: S:P.123 Hydrogen bonds: S:S.118, X:S.118 Water bridges: S:S.118, X:S.118 pi-Stacking: X:H.114

120 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.2: 2 residues within 4Å: Chain A: D.80 Chain V: Q.82 Ligand excluded by PLIP CD.3: 10 residues within 4Å: Chain A: D.127 Chain E: D.127, S.131 Chain I: D.127, S.131 Ligands: CD.6, CD.43, CD.46, CD.83, CD.86 Ligand excluded by PLIP CD.4: 5 residues within 4Å: Ligands: 4LF.1, 4LF.41, CD.44, 4LF.81, CD.84 Ligand excluded by PLIP CD.5: 5 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.45, CD.85 Ligand excluded by PLIP CD.6: 8 residues within 4Å: Chain A: S.131 Chain E: S.131 Chain I: S.131 Ligands: CD.3, CD.43, CD.46, CD.83, CD.86 Ligand excluded by PLIP CD.12: 2 residues within 4Å: Chain B: D.80 Chain W: Q.82 Ligand excluded by PLIP CD.13: 10 residues within 4Å: Chain B: D.127 Chain G: D.127, S.131 Chain L: D.127, S.131 Ligands: CD.16, CD.63, CD.66, CD.113, CD.116 Ligand excluded by PLIP CD.14: 5 residues within 4Å: Ligands: 4LF.11, 4LF.61, CD.64, 4LF.111, CD.114 Ligand excluded by PLIP CD.15: 5 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.65, CD.115 Ligand excluded by PLIP CD.16: 8 residues within 4Å: Chain B: S.131 Chain G: S.131 Chain L: S.131 Ligands: CD.13, CD.63, CD.66, CD.113, CD.116 Ligand excluded by PLIP CD.22: 2 residues within 4Å: Chain C: D.80 Chain X: Q.82 Ligand excluded by PLIP CD.23: 10 residues within 4Å: Chain C: D.127 Chain H: D.127, S.131 Chain J: D.127, S.131 Ligands: CD.26, CD.73, CD.76, CD.93, CD.96 Ligand excluded by PLIP CD.24: 5 residues within 4Å: Ligands: 4LF.21, 4LF.71, CD.74, 4LF.91, CD.94 Ligand excluded by PLIP CD.25: 5 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.75, CD.95 Ligand excluded by PLIP CD.26: 8 residues within 4Å: Chain C: S.131 Chain H: S.131 Chain J: S.131 Ligands: CD.23, CD.73, CD.76, CD.93, CD.96 Ligand excluded by PLIP CD.32: 2 residues within 4Å: Chain D: D.80 Chain U: Q.82 Ligand excluded by PLIP CD.33: 10 residues within 4Å: Chain D: D.127 Chain F: D.127, S.131 Chain K: D.127, S.131 Ligands: CD.36, CD.53, CD.56, CD.103, CD.106 Ligand excluded by PLIP CD.34: 5 residues within 4Å: Ligands: 4LF.31, 4LF.51, CD.54, 4LF.101, CD.104 Ligand excluded by PLIP CD.35: 5 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.55, CD.105 Ligand excluded by PLIP CD.36: 8 residues within 4Å: Chain D: S.131 Chain F: S.131 Chain K: S.131 Ligands: CD.33, CD.53, CD.56, CD.103, CD.106 Ligand excluded by PLIP CD.42: 2 residues within 4Å: Chain E: D.80 Chain Q: Q.82 Ligand excluded by PLIP CD.43: 10 residues within 4Å: Chain A: D.127, S.131 Chain E: D.127 Chain I: D.127, S.131 Ligands: CD.3, CD.6, CD.46, CD.83, CD.86 Ligand excluded by PLIP CD.44: 5 residues within 4Å: Ligands: 4LF.1, CD.4, 4LF.41, 4LF.81, CD.84 Ligand excluded by PLIP CD.45: 5 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.5, CD.85 Ligand excluded by PLIP CD.46: 8 residues within 4Å: Chain A: S.131 Chain E: S.131 Chain I: S.131 Ligands: CD.3, CD.6, CD.43, CD.83, CD.86 Ligand excluded by PLIP CD.52: 2 residues within 4Å: Chain F: D.80 Chain T: Q.82 Ligand excluded by PLIP CD.53: 10 residues within 4Å: Chain D: D.127, S.131 Chain F: D.127 Chain K: D.127, S.131 Ligands: CD.33, CD.36, CD.56, CD.103, CD.106 Ligand excluded by PLIP CD.54: 5 residues within 4Å: Ligands: 4LF.31, CD.34, 4LF.51, 4LF.101, CD.104 Ligand excluded by PLIP CD.55: 5 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.35, CD.105 Ligand excluded by PLIP CD.56: 8 residues within 4Å: Chain D: S.131 Chain F: S.131 Chain K: S.131 Ligands: CD.33, CD.36, CD.53, CD.103, CD.106 Ligand excluded by PLIP CD.62: 2 residues within 4Å: Chain G: D.80 Chain S: Q.82 Ligand excluded by PLIP CD.63: 10 residues within 4Å: Chain B: D.127, S.131 Chain G: D.127 Chain L: D.127, S.131 Ligands: CD.13, CD.16, CD.66, CD.113, CD.116 Ligand excluded by PLIP CD.64: 5 residues within 4Å: Ligands: 4LF.11, CD.14, 4LF.61, 4LF.111, CD.114 Ligand excluded by PLIP CD.65: 5 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.115 Ligand excluded by PLIP CD.66: 8 residues within 4Å: Chain B: S.131 Chain G: S.131 Chain L: S.131 Ligands: CD.13, CD.16, CD.63, CD.113, CD.116 Ligand excluded by PLIP CD.72: 2 residues within 4Å: Chain H: D.80 Chain R: Q.82 Ligand excluded by PLIP CD.73: 10 residues within 4Å: Chain C: D.127, S.131 Chain H: D.127 Chain J: D.127, S.131 Ligands: CD.23, CD.26, CD.76, CD.93, CD.96 Ligand excluded by PLIP CD.74: 5 residues within 4Å: Ligands: 4LF.21, CD.24, 4LF.71, 4LF.91, CD.94 Ligand excluded by PLIP CD.75: 5 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.25, CD.95 Ligand excluded by PLIP CD.76: 8 residues within 4Å: Chain C: S.131 Chain H: S.131 Chain J: S.131 Ligands: CD.23, CD.26, CD.73, CD.93, CD.96 Ligand excluded by PLIP CD.82: 2 residues within 4Å: Chain I: D.80 Chain P: Q.82 Ligand excluded by PLIP CD.83: 10 residues within 4Å: Chain A: D.127, S.131 Chain E: D.127, S.131 Chain I: D.127 Ligands: CD.3, CD.6, CD.43, CD.46, CD.86 Ligand excluded by PLIP CD.84: 5 residues within 4Å: Ligands: 4LF.1, CD.4, 4LF.41, CD.44, 4LF.81 Ligand excluded by PLIP CD.85: 5 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.5, CD.45 Ligand excluded by PLIP CD.86: 8 residues within 4Å: Chain A: S.131 Chain E: S.131 Chain I: S.131 Ligands: CD.3, CD.6, CD.43, CD.46, CD.83 Ligand excluded by PLIP CD.92: 2 residues within 4Å: Chain J: D.80 Chain M: Q.82 Ligand excluded by PLIP CD.93: 10 residues within 4Å: Chain C: D.127, S.131 Chain H: D.127, S.131 Chain J: D.127 Ligands: CD.23, CD.26, CD.73, CD.76, CD.96 Ligand excluded by PLIP CD.94: 5 residues within 4Å: Ligands: 4LF.21, CD.24, 4LF.71, CD.74, 4LF.91 Ligand excluded by PLIP CD.95: 5 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.25, CD.75 Ligand excluded by PLIP CD.96: 8 residues within 4Å: Chain C: S.131 Chain H: S.131 Chain J: S.131 Ligands: CD.23, CD.26, CD.73, CD.76, CD.93 Ligand excluded by PLIP CD.102: 2 residues within 4Å: Chain K: D.80 Chain N: Q.82 Ligand excluded by PLIP CD.103: 10 residues within 4Å: Chain D: D.127, S.131 Chain F: D.127, S.131 Chain K: D.127 Ligands: CD.33, CD.36, CD.53, CD.56, CD.106 Ligand excluded by PLIP CD.104: 5 residues within 4Å: Ligands: 4LF.31, CD.34, 4LF.51, CD.54, 4LF.101 Ligand excluded by PLIP CD.105: 5 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.35, CD.55 Ligand excluded by PLIP CD.106: 8 residues within 4Å: Chain D: S.131 Chain F: S.131 Chain K: S.131 Ligands: CD.33, CD.36, CD.53, CD.56, CD.103 Ligand excluded by PLIP CD.112: 2 residues within 4Å: Chain L: D.80 Chain O: Q.82 Ligand excluded by PLIP CD.113: 10 residues within 4Å: Chain B: D.127, S.131 Chain G: D.127, S.131 Chain L: D.127 Ligands: CD.13, CD.16, CD.63, CD.66, CD.116 Ligand excluded by PLIP CD.114: 5 residues within 4Å: Ligands: 4LF.11, CD.14, 4LF.61, CD.64, 4LF.111 Ligand excluded by PLIP CD.115: 5 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.65 Ligand excluded by PLIP CD.116: 8 residues within 4Å: Chain B: S.131 Chain G: S.131 Chain L: S.131 Ligands: CD.13, CD.16, CD.63, CD.66, CD.113 Ligand excluded by PLIP CD.122: 2 residues within 4Å: Chain J: Q.82 Chain M: D.80 Ligand excluded by PLIP CD.123: 10 residues within 4Å: Chain M: D.127 Chain Q: D.127, S.131 Chain U: D.127, S.131 Ligands: CD.126, CD.163, CD.166, CD.203, CD.206 Ligand excluded by PLIP CD.124: 5 residues within 4Å: Ligands: 4LF.121, 4LF.161, CD.164, 4LF.201, CD.204 Ligand excluded by PLIP CD.125: 5 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.165, CD.205 Ligand excluded by PLIP CD.126: 8 residues within 4Å: Chain M: S.131 Chain Q: S.131 Chain U: S.131 Ligands: CD.123, CD.163, CD.166, CD.203, CD.206 Ligand excluded by PLIP CD.132: 2 residues within 4Å: Chain K: Q.82 Chain N: D.80 Ligand excluded by PLIP CD.133: 10 residues within 4Å: Chain N: D.127 Chain S: D.127, S.131 Chain X: D.127, S.131 Ligands: CD.136, CD.183, CD.186, CD.233, CD.236 Ligand excluded by PLIP CD.134: 5 residues within 4Å: Ligands: 4LF.131, 4LF.181, CD.184, 4LF.231, CD.234 Ligand excluded by PLIP CD.135: 5 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.185, CD.235 Ligand excluded by PLIP CD.136: 8 residues within 4Å: Chain N: S.131 Chain S: S.131 Chain X: S.131 Ligands: CD.133, CD.183, CD.186, CD.233, CD.236 Ligand excluded by PLIP CD.142: 2 residues within 4Å: Chain L: Q.82 Chain O: D.80 Ligand excluded by PLIP CD.143: 10 residues within 4Å: Chain O: D.127 Chain T: D.127, S.131 Chain V: D.127, S.131 Ligands: CD.146, CD.193, CD.196, CD.213, CD.216 Ligand excluded by PLIP CD.144: 5 residues within 4Å: Ligands: 4LF.141, 4LF.191, CD.194, 4LF.211, CD.214 Ligand excluded by PLIP CD.145: 5 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.195, CD.215 Ligand excluded by PLIP CD.146: 8 residues within 4Å: Chain O: S.131 Chain T: S.131 Chain V: S.131 Ligands: CD.143, CD.193, CD.196, CD.213, CD.216 Ligand excluded by PLIP CD.152: 2 residues within 4Å: Chain I: Q.82 Chain P: D.80 Ligand excluded by PLIP CD.153: 10 residues within 4Å: Chain P: D.127 Chain R: D.127, S.131 Chain W: D.127, S.131 Ligands: CD.156, CD.173, CD.176, CD.223, CD.226 Ligand excluded by PLIP CD.154: 5 residues within 4Å: Ligands: 4LF.151, 4LF.171, CD.174, 4LF.221, CD.224 Ligand excluded by PLIP CD.155: 5 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.175, CD.225 Ligand excluded by PLIP CD.156: 8 residues within 4Å: Chain P: S.131 Chain R: S.131 Chain W: S.131 Ligands: CD.153, CD.173, CD.176, CD.223, CD.226 Ligand excluded by PLIP CD.162: 2 residues within 4Å: Chain E: Q.82 Chain Q: D.80 Ligand excluded by PLIP CD.163: 10 residues within 4Å: Chain M: D.127, S.131 Chain Q: D.127 Chain U: D.127, S.131 Ligands: CD.123, CD.126, CD.166, CD.203, CD.206 Ligand excluded by PLIP CD.164: 5 residues within 4Å: Ligands: 4LF.121, CD.124, 4LF.161, 4LF.201, CD.204 Ligand excluded by PLIP CD.165: 5 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.125, CD.205 Ligand excluded by PLIP CD.166: 8 residues within 4Å: Chain M: S.131 Chain Q: S.131 Chain U: S.131 Ligands: CD.123, CD.126, CD.163, CD.203, CD.206 Ligand excluded by PLIP CD.172: 2 residues within 4Å: Chain H: Q.82 Chain R: D.80 Ligand excluded by PLIP CD.173: 10 residues within 4Å: Chain P: D.127, S.131 Chain R: D.127 Chain W: D.127, S.131 Ligands: CD.153, CD.156, CD.176, CD.223, CD.226 Ligand excluded by PLIP CD.174: 5 residues within 4Å: Ligands: 4LF.151, CD.154, 4LF.171, 4LF.221, CD.224 Ligand excluded by PLIP CD.175: 5 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.155, CD.225 Ligand excluded by PLIP CD.176: 8 residues within 4Å: Chain P: S.131 Chain R: S.131 Chain W: S.131 Ligands: CD.153, CD.156, CD.173, CD.223, CD.226 Ligand excluded by PLIP CD.182: 2 residues within 4Å: Chain G: Q.82 Chain S: D.80 Ligand excluded by PLIP CD.183: 10 residues within 4Å: Chain N: D.127, S.131 Chain S: D.127 Chain X: D.127, S.131 Ligands: CD.133, CD.136, CD.186, CD.233, CD.236 Ligand excluded by PLIP CD.184: 5 residues within 4Å: Ligands: 4LF.131, CD.134, 4LF.181, 4LF.231, CD.234 Ligand excluded by PLIP CD.185: 5 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.135, CD.235 Ligand excluded by PLIP CD.186: 8 residues within 4Å: Chain N: S.131 Chain S: S.131 Chain X: S.131 Ligands: CD.133, CD.136, CD.183, CD.233, CD.236 Ligand excluded by PLIP CD.192: 2 residues within 4Å: Chain F: Q.82 Chain T: D.80 Ligand excluded by PLIP CD.193: 10 residues within 4Å: Chain O: D.127, S.131 Chain T: D.127 Chain V: D.127, S.131 Ligands: CD.143, CD.146, CD.196, CD.213, CD.216 Ligand excluded by PLIP CD.194: 5 residues within 4Å: Ligands: 4LF.141, CD.144, 4LF.191, 4LF.211, CD.214 Ligand excluded by PLIP CD.195: 5 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.145, CD.215 Ligand excluded by PLIP CD.196: 8 residues within 4Å: Chain O: S.131 Chain T: S.131 Chain V: S.131 Ligands: CD.143, CD.146, CD.193, CD.213, CD.216 Ligand excluded by PLIP CD.202: 2 residues within 4Å: Chain D: Q.82 Chain U: D.80 Ligand excluded by PLIP CD.203: 10 residues within 4Å: Chain M: D.127, S.131 Chain Q: D.127, S.131 Chain U: D.127 Ligands: CD.123, CD.126, CD.163, CD.166, CD.206 Ligand excluded by PLIP CD.204: 5 residues within 4Å: Ligands: 4LF.121, CD.124, 4LF.161, CD.164, 4LF.201 Ligand excluded by PLIP CD.205: 5 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.125, CD.165 Ligand excluded by PLIP CD.206: 8 residues within 4Å: Chain M: S.131 Chain Q: S.131 Chain U: S.131 Ligands: CD.123, CD.126, CD.163, CD.166, CD.203 Ligand excluded by PLIP CD.212: 2 residues within 4Å: Chain A: Q.82 Chain V: D.80 Ligand excluded by PLIP CD.213: 10 residues within 4Å: Chain O: D.127, S.131 Chain T: D.127, S.131 Chain V: D.127 Ligands: CD.143, CD.146, CD.193, CD.196, CD.216 Ligand excluded by PLIP CD.214: 5 residues within 4Å: Ligands: 4LF.141, CD.144, 4LF.191, CD.194, 4LF.211 Ligand excluded by PLIP CD.215: 5 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.145, CD.195 Ligand excluded by PLIP CD.216: 8 residues within 4Å: Chain O: S.131 Chain T: S.131 Chain V: S.131 Ligands: CD.143, CD.146, CD.193, CD.196, CD.213 Ligand excluded by PLIP CD.222: 2 residues within 4Å: Chain B: Q.82 Chain W: D.80 Ligand excluded by PLIP CD.223: 10 residues within 4Å: Chain P: D.127, S.131 Chain R: D.127, S.131 Chain W: D.127 Ligands: CD.153, CD.156, CD.173, CD.176, CD.226 Ligand excluded by PLIP CD.224: 5 residues within 4Å: Ligands: 4LF.151, CD.154, 4LF.171, CD.174, 4LF.221 Ligand excluded by PLIP CD.225: 5 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.155, CD.175 Ligand excluded by PLIP CD.226: 8 residues within 4Å: Chain P: S.131 Chain R: S.131 Chain W: S.131 Ligands: CD.153, CD.156, CD.173, CD.176, CD.223 Ligand excluded by PLIP CD.232: 2 residues within 4Å: Chain C: Q.82 Chain X: D.80 Ligand excluded by PLIP CD.233: 10 residues within 4Å: Chain N: D.127, S.131 Chain S: D.127, S.131 Chain X: D.127 Ligands: CD.133, CD.136, CD.183, CD.186, CD.236 Ligand excluded by PLIP CD.234: 5 residues within 4Å: Ligands: 4LF.131, CD.134, 4LF.181, CD.184, 4LF.231 Ligand excluded by PLIP CD.235: 5 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.135, CD.185 Ligand excluded by PLIP CD.236: 8 residues within 4Å: Chain N: S.131 Chain S: S.131 Chain X: S.131 Ligands: CD.133, CD.136, CD.183, CD.186, CD.233 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 2 residues within 4Å: Chain A: Q.6, N.7 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: Q.6, N.7 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain C: Q.6, N.7 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain D: Q.6, N.7 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain E: Q.6, N.7 Ligand excluded by PLIP SO4.57: 2 residues within 4Å: Chain F: Q.6, N.7 Ligand excluded by PLIP SO4.67: 2 residues within 4Å: Chain G: Q.6, N.7 Ligand excluded by PLIP SO4.77: 2 residues within 4Å: Chain H: Q.6, N.7 Ligand excluded by PLIP SO4.87: 2 residues within 4Å: Chain I: Q.6, N.7 Ligand excluded by PLIP SO4.97: 2 residues within 4Å: Chain J: Q.6, N.7 Ligand excluded by PLIP SO4.107: 2 residues within 4Å: Chain K: Q.6, N.7 Ligand excluded by PLIP SO4.117: 2 residues within 4Å: Chain L: Q.6, N.7 Ligand excluded by PLIP SO4.127: 2 residues within 4Å: Chain M: Q.6, N.7 Ligand excluded by PLIP SO4.137: 2 residues within 4Å: Chain N: Q.6, N.7 Ligand excluded by PLIP SO4.147: 2 residues within 4Å: Chain O: Q.6, N.7 Ligand excluded by PLIP SO4.157: 2 residues within 4Å: Chain P: Q.6, N.7 Ligand excluded by PLIP SO4.167: 2 residues within 4Å: Chain Q: Q.6, N.7 Ligand excluded by PLIP SO4.177: 2 residues within 4Å: Chain R: Q.6, N.7 Ligand excluded by PLIP SO4.187: 2 residues within 4Å: Chain S: Q.6, N.7 Ligand excluded by PLIP SO4.197: 2 residues within 4Å: Chain T: Q.6, N.7 Ligand excluded by PLIP SO4.207: 2 residues within 4Å: Chain U: Q.6, N.7 Ligand excluded by PLIP SO4.217: 2 residues within 4Å: Chain V: Q.6, N.7 Ligand excluded by PLIP SO4.227: 2 residues within 4Å: Chain W: Q.6, N.7 Ligand excluded by PLIP SO4.237: 2 residues within 4Å: Chain X: Q.6, N.7 Ligand excluded by PLIP

72 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: E.45, R.168 Chain O: K.143, D.146, H.147 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain A: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.10: 8 residues within 4Å: Chain A: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain B: E.45, R.168 Chain P: K.143, D.146, H.147 Ligand excluded by PLIP GOL.19: 3 residues within 4Å: Chain B: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.20: 8 residues within 4Å: Chain B: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.28: 5 residues within 4Å: Chain C: E.45, R.168 Chain N: K.143, D.146, H.147 Ligand excluded by PLIP GOL.29: 3 residues within 4Å: Chain C: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.30: 8 residues within 4Å: Chain C: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.38: 5 residues within 4Å: Chain D: E.45, R.168 Chain M: K.143, D.146, H.147 Ligand excluded by PLIP GOL.39: 3 residues within 4Å: Chain D: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.40: 8 residues within 4Å: Chain D: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.48: 5 residues within 4Å: Chain E: E.45, R.168 Chain U: K.143, D.146, H.147 Ligand excluded by PLIP GOL.49: 3 residues within 4Å: Chain E: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.50: 8 residues within 4Å: Chain E: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.58: 5 residues within 4Å: Chain F: E.45, R.168 Chain V: K.143, D.146, H.147 Ligand excluded by PLIP GOL.59: 3 residues within 4Å: Chain F: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.60: 8 residues within 4Å: Chain F: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.68: 5 residues within 4Å: Chain G: E.45, R.168 Chain X: K.143, D.146, H.147 Ligand excluded by PLIP GOL.69: 3 residues within 4Å: Chain G: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.70: 8 residues within 4Å: Chain G: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.78: 5 residues within 4Å: Chain H: E.45, R.168 Chain W: K.143, D.146, H.147 Ligand excluded by PLIP GOL.79: 3 residues within 4Å: Chain H: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.80: 8 residues within 4Å: Chain H: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.88: 5 residues within 4Å: Chain I: E.45, R.168 Chain R: K.143, D.146, H.147 Ligand excluded by PLIP GOL.89: 3 residues within 4Å: Chain I: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.90: 8 residues within 4Å: Chain I: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.98: 5 residues within 4Å: Chain J: E.45, R.168 Chain Q: K.143, D.146, H.147 Ligand excluded by PLIP GOL.99: 3 residues within 4Å: Chain J: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.100: 8 residues within 4Å: Chain J: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.108: 5 residues within 4Å: Chain K: E.45, R.168 Chain S: K.143, D.146, H.147 Ligand excluded by PLIP GOL.109: 3 residues within 4Å: Chain K: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.110: 8 residues within 4Å: Chain K: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.118: 5 residues within 4Å: Chain L: E.45, R.168 Chain T: K.143, D.146, H.147 Ligand excluded by PLIP GOL.119: 3 residues within 4Å: Chain L: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.120: 8 residues within 4Å: Chain L: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.128: 5 residues within 4Å: Chain C: K.143, D.146, H.147 Chain M: E.45, R.168 Ligand excluded by PLIP GOL.129: 3 residues within 4Å: Chain M: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.130: 8 residues within 4Å: Chain M: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.138: 5 residues within 4Å: Chain D: K.143, D.146, H.147 Chain N: E.45, R.168 Ligand excluded by PLIP GOL.139: 3 residues within 4Å: Chain N: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.140: 8 residues within 4Å: Chain N: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.148: 5 residues within 4Å: Chain B: K.143, D.146, H.147 Chain O: E.45, R.168 Ligand excluded by PLIP GOL.149: 3 residues within 4Å: Chain O: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.150: 8 residues within 4Å: Chain O: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.158: 5 residues within 4Å: Chain A: K.143, D.146, H.147 Chain P: E.45, R.168 Ligand excluded by PLIP GOL.159: 3 residues within 4Å: Chain P: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.160: 8 residues within 4Å: Chain P: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.168: 5 residues within 4Å: Chain I: K.143, D.146, H.147 Chain Q: E.45, R.168 Ligand excluded by PLIP GOL.169: 3 residues within 4Å: Chain Q: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.170: 8 residues within 4Å: Chain Q: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.178: 5 residues within 4Å: Chain J: K.143, D.146, H.147 Chain R: E.45, R.168 Ligand excluded by PLIP GOL.179: 3 residues within 4Å: Chain R: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.180: 8 residues within 4Å: Chain R: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.188: 5 residues within 4Å: Chain L: K.143, D.146, H.147 Chain S: E.45, R.168 Ligand excluded by PLIP GOL.189: 3 residues within 4Å: Chain S: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.190: 8 residues within 4Å: Chain S: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.198: 5 residues within 4Å: Chain K: K.143, D.146, H.147 Chain T: E.45, R.168 Ligand excluded by PLIP GOL.199: 3 residues within 4Å: Chain T: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.200: 8 residues within 4Å: Chain T: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.208: 5 residues within 4Å: Chain F: K.143, D.146, H.147 Chain U: E.45, R.168 Ligand excluded by PLIP GOL.209: 3 residues within 4Å: Chain U: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.210: 8 residues within 4Å: Chain U: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.218: 5 residues within 4Å: Chain E: K.143, D.146, H.147 Chain V: E.45, R.168 Ligand excluded by PLIP GOL.219: 3 residues within 4Å: Chain V: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.220: 8 residues within 4Å: Chain V: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.228: 5 residues within 4Å: Chain G: K.143, D.146, H.147 Chain W: E.45, R.168 Ligand excluded by PLIP GOL.229: 3 residues within 4Å: Chain W: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.230: 8 residues within 4Å: Chain W: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP GOL.238: 5 residues within 4Å: Chain H: K.143, D.146, H.147 Chain X: E.45, R.168 Ligand excluded by PLIP GOL.239: 3 residues within 4Å: Chain X: K.104, S.105, Q.108 Ligand excluded by PLIP GOL.240: 8 residues within 4Å: Chain X: Y.23, E.57, K.58, G.61, H.132, F.133, E.136, E.137 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakajima, H. et al., Construction of an enterobactin analogue with symmetrically arranged monomer subunits of ferritin. Chem.Commun.(Camb.) (2015)

Release Date

2015-11-18

Peptides

Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin light chain

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