SMTL ID : 5azf.2 (1 other biounit)

Crystal structure of LGG-1 complexed with a WEEL peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x TRP- GLU- GLU- LEU: peptide from Autophagy-related protein 19(Non-covalent)

TRP-GLU-GLU-LEU.1: 15 residues within 4Å: Chain A: E.20, I.24, R.31, P.33, V.34, K.49, K.51, Y.52, L.53, V.54, P.55, F.63, R.70, F.107 Ligands: CD.10 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.24, A:P.33, A:K.49, A:K.51, A:K.51, A:Y.52, A:L.53, A:L.53, A:V.54, A:F.63, A:F.107 Hydrogen bonds: A:R.31, A:K.51, A:L.53, A:L.53 Water bridges: A:Y.28, A:K.51 Salt bridges: A:R.31, A:R.31

8 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.2: 1 residues within 4Å: Chain A: H.45 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.45, H2O.6 CD.3: 1 residues within 4Å: Chain A: H.101 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.101, H2O.1, H2O.6, H2O.6, H2O.7 CD.4: 2 residues within 4Å: Chain A: H.102 Ligands: CD.8 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.102, H2O.3, H2O.7, H2O.7 CD.5: 2 residues within 4Å: Chain A: H.3, G.119 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.3, A:G.119 CD.6: 1 residues within 4Å: Chain A: D.30 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.30, A:D.30, H2O.5, H2O.6 CD.7: 1 residues within 4Å: Chain A: E.20 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.20, A:E.20 CD.8: 2 residues within 4Å: Chain A: H.102 Ligands: CD.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.102, H2O.3, H2O.5 CD.10: 1 residues within 4Å: Ligands: TRP-GLU-GLU-LEU.1 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 3 residues within 4Å: Chain A: K.49, K.50, K.51 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.50, A:K.51 Water bridges: A:K.51 Salt bridges: A:K.49, A:K.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, F. et al., Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy. Mol.Cell (2015)

Release Date

2015-12-30

Peptides

Protein lgg-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein lgg-1

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