SMTL ID : 5azt.2 (1 other biounit)

Ternary complex of hPPARalpha ligand binding domain, 17-oxoDHA and a SRC1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

monomer

Ligands

1 x 4M5: (4~{Z},7~{Z},10~{Z},13~{Z},19~{Z})-17-oxidanylidenedocosa-4,7,10,13,19-pentaenoic acid(Covalent)

4M5.1: 15 residues within 4Å: Chain A: L.48, A.51, E.52, L.55, R.72, C.76, C.77, Q.78, T.80, S.81, Y.115, V.133, H.241, L.261, Y.265 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.48, A:A.51, A:E.52, A:T.80, A:V.133 Hydrogen bonds: A:C.77, A:S.81, A:Y.265 Salt bridges: A:H.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egawa, D. et al., 17-OxoDHA Is a PPAR alpha/gamma Dual Covalent Modifier and Agonist. Acs Chem.Biol. (2016)

Release Date

2016-07-06

Peptides

Peroxisome proliferator-activated receptor alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor alpha

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