SMTL ID : 5b0l.4 (3 other biounits)

Structure of MoeN5-Sso7d fusion protein in complex with beta-nonyl glucoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

3 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.1: 11 residues within 4Å: Chain A: Y.49, M.80, K.81, D.84, Q.138, Y.159, F.163, T.196, D.199 Chain B: C.100, L.103 11 PLIP interactions: 1 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:L.103, A:Q.138, A:F.163, A:F.163 Hydrogen bonds: A:K.81, A:D.84, A:T.196, A:D.199 Water bridges: A:K.142, A:K.142 Salt bridges: A:K.81 BNG.2: 12 residues within 4Å: Chain B: A.45, R.47, L.48, Y.49, K.81, Y.159, F.163, L.164, I.195, T.196, D.199 Ligands: BNG.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.48, B:Y.49, B:F.163, B:L.164, B:I.195 Hydrogen bonds: B:R.47, B:L.48, B:Y.49, B:K.81, B:K.81 BNG.3: 12 residues within 4Å: Chain A: C.100, L.103 Chain B: Y.49, K.81, D.84, M.87, C.135, Q.138, Y.159, F.163, D.199 Ligands: BNG.2 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Q.138, B:F.163, B:F.163, A:L.103 Hydrogen bonds: B:K.81, B:D.84 Water bridges: B:K.81, B:K.81, B:Y.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., Moenomycin Biosynthesis: Structure and Mechanism of Action of the Prenyltransferase MoeN5. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2016-03-23

Peptides

MoeN5,DNA-binding protein 7d: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

MoeN5,DNA-binding protein 7d

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