SMTL ID : 5b0q.1

beta-1,2-Mannobiose phosphorylase from Listeria innocua - mannose complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 7 residues within 4Å: Chain A: R.46, R.89, M.90, L.103, E.140, V.158, K.188 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.46, A:R.46, A:K.188 Water bridges: A:E.140, A:D.141, A:D.141, A:S.156, A:K.188, A:D.333 Salt bridges: A:R.89, A:K.188 MAN.4: 7 residues within 4Å: Chain B: R.46, R.89, M.90, L.103, E.140, V.158, K.188 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.46, B:R.46, B:K.188 Water bridges: B:S.156, B:K.188 Salt bridges: B:R.89, B:K.188

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: K.188, D.189, R.206, R.246, H.265, Y.273, F.314 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.273 Water bridges: A:R.246, A:R.246 Salt bridges: A:K.188, A:R.206, A:R.246, A:H.265 SO4.3: 4 residues within 4Å: Chain A: V.17, K.18, R.110, L.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.18 Water bridges: A:R.110 Salt bridges: A:R.110 SO4.5: 7 residues within 4Å: Chain B: K.188, D.189, R.206, R.246, H.265, Y.273, F.314 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.189, B:Y.273, B:Y.273 Water bridges: B:R.206, B:R.246 Salt bridges: B:K.188, B:R.206, B:R.246, B:H.265 SO4.6: 4 residues within 4Å: Chain B: V.17, K.18, R.110, L.122 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.18 Salt bridges: B:K.18, B:R.110

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.7: 4 residues within 4Å: Chain B: I.20, H.21, E.22, Y.129 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsuda, T. et al., Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua. Febs Lett. (2015)

Release Date

2015-12-02

Peptides

Lin0857 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lin0857 protein

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