SMTL ID : 5b1x.1 (3 other biounits)

Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in complex with biantennary glycan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-NAG.1: 10 residues within 4Å: Chain A: E.92, S.94, E.98, N.104, R.106, N.115, D.116, V.117, Q.123 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.94, A:E.98, A:N.115, A:N.115, A:N.104, A:R.106, A:N.115, A:Q.123

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: V.40, N.42, E.46, E.128 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:V.40, A:E.46, A:E.46, A:E.128, A:E.128 CA.3: 6 residues within 4Å: Chain A: E.92, S.94, E.98, N.115, D.116 Ligands: MAN-NAG.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.92, A:S.94, A:E.98, A:D.116, A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan. Febs Lett. (2016)

Release Date

2016-05-11

Peptides

C-type lectin domain family 4 member A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C-type lectin domain family 4 member A

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