- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 3 x MQG: 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucopyranose(Non-covalent)
MQG.2: 18 residues within 4Å:- Chain A: H.44, D.46, D.47, I.50, G.74, M.76, G.77, R.92, D.115, T.116, H.152, H.155, Q.223
- Chain C: F.168, L.171, H.264
- Ligands: ZN.1, HEZ.4
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:G.74, A:R.92, A:R.92
- Water bridges: A:D.46, A:Q.223, C:H.264
- Salt bridges: A:H.44, A:H.152, C:H.264
MQG.6: 17 residues within 4Å:- Chain A: F.168, L.171, H.264
- Chain B: H.44, D.46, D.47, I.50, G.74, G.77, R.92, D.115, T.116, H.152, H.155, Q.223
- Ligands: ZN.5, HEZ.7
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.74, B:R.92, B:R.92, A:H.264
- Water bridges: B:D.46, B:Q.223, A:H.264
- Salt bridges: B:H.44, B:H.152, A:H.264
MQG.9: 17 residues within 4Å:- Chain B: L.171, H.264
- Chain C: H.44, D.46, D.47, I.50, G.74, M.76, G.77, R.92, D.115, T.116, H.152, H.155, Q.223
- Ligands: ZN.8, HEZ.10
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:G.74, C:R.92, C:R.92, B:H.264
- Water bridges: C:D.46, C:Q.223, B:H.264
- Salt bridges: C:H.44, C:H.152, B:H.264
- 5 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.3: 4 residues within 4Å:- Chain A: R.156, R.157
- Chain C: Y.120, R.157
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:R.157, C:Y.120
- Hydrogen bonds: A:R.156, A:R.156, C:Y.120, C:R.157
HEZ.4: 7 residues within 4Å:- Chain A: S.151, H.152
- Chain C: I.163, A.167, F.168, L.171
- Ligands: MQG.2
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:H.152, C:A.167, C:F.168
- Hydrogen bonds: A:S.151, C:I.163
HEZ.7: 7 residues within 4Å:- Chain A: I.163, A.167, F.168, L.171
- Chain B: S.151, H.152
- Ligands: MQG.6
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:A.167, A:F.168, B:H.152
- Hydrogen bonds: A:I.163
HEZ.10: 7 residues within 4Å:- Chain B: I.163, A.167, F.168, L.171
- Chain C: S.151, H.152
- Ligands: MQG.9
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:S.151
- Hydrophobic interactions: B:A.167, B:F.168
HEZ.11: 6 residues within 4Å:- Chain C: S.190, F.191, I.192, I.257, M.258, G.260
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.191, C:I.257
- Hydrogen bonds: C:D.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, T. et al., Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii. J.Struct.Biol. (2016)
- Release Date
- 2016-08-10
- Peptides
- Putative uncharacterized protein PH0499: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 3 x MQG: 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucopyranose(Non-covalent)
- 5 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, T. et al., Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii. J.Struct.Biol. (2016)
- Release Date
- 2016-08-10
- Peptides
- Putative uncharacterized protein PH0499: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C