SMTL ID : 5b2u.1

Crystal Structure of P450BM3 with N-perfluorohexanoyl -L-tryptophan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: K.70, L.76, L.87, F.88, W.97, I.154, F.262, A.265, T.269, T.270, L.273, T.328, F.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: DMS.3 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:L.87, A:F.88, A:F.88, A:I.154, A:F.262, A:A.265, A:L.273, A:F.329, A:F.394, A:I.402, A:A.407 Water bridges: A:K.70, A:K.70, A:H.101, A:S.333, A:S.333, A:S.333, A:N.396, A:R.399 Salt bridges: A:K.70, A:R.399 Metal complexes: A:C.401 HEM.4: 24 residues within 4Å: Chain B: K.70, L.76, L.87, F.88, W.97, I.154, F.262, A.265, T.269, T.270, L.273, T.328, F.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: DMS.6 22 PLIP interactions: 22 interactions with chain B, Hydrophobic interactions: B:L.87, B:F.88, B:F.88, B:F.88, B:I.154, B:F.262, B:F.262, B:A.265, B:L.273, B:F.329, B:F.329, B:F.394, B:I.402 Hydrogen bonds: B:R.399 Water bridges: B:K.70, B:K.70, B:S.333, B:S.333, B:S.333 Salt bridges: B:K.70, B:R.399 Metal complexes: B:C.401

2 x W06: (2~{S})-3-(1~{H}-indol-3-yl)-2-[2,2,3,3,4,4,5,5,6,6,6-undecakis(fluoranyl)hexanoylamino]propanoic acid(Non-covalent)

W06.2: 19 residues within 4Å: Chain A: L.21, P.26, V.27, L.30, F.43, A.45, R.48, T.50, Y.52, S.73, Q.74, A.75, L.189, F.329, P.330, A.331, M.355, T.437, L.438 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.45, A:R.48, A:T.50 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75 pi-Stacking: A:F.43 Halogen bonds: A:A.331, A:T.437, A:L.438 W06.5: 19 residues within 4Å: Chain B: L.21, P.26, V.27, L.30, F.43, A.45, R.48, T.50, Y.52, S.73, Q.74, A.75, M.186, L.189, F.329, P.330, A.331, M.355, L.438 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.21, B:F.43, B:A.45, B:R.48, B:T.50 Hydrogen bonds: B:Y.52, B:Q.74, B:A.75 Halogen bonds: B:A.331, B:L.438

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: F.88, A.265, T.269, F.329 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.88 DMS.6: 5 residues within 4Å: Chain B: F.88, A.265, T.269, F.329 Ligands: HEM.4 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:F.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, Z. et al., Crystal Structure of P450BM3 with decoy molecules. to be published

Release Date

2017-02-08

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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