SMTL ID : 5b3f.1

Crystal structure of phosphoribulokinase from Methanospirillum hungatei

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: D.45, S.46, G.47, S.48, G.49, K.50, S.51 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.45, A:G.47, A:S.48, A:G.49, A:K.50, A:S.51, A:S.51, A:S.51 Water bridges: A:T.52 Salt bridges: A:K.50 SO4.2: 5 residues within 4Å: Chain A: R.79, R.82, Y.118, H.120, G.123 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.79, A:R.82, A:H.120 SO4.3: 6 residues within 4Å: Chain B: D.45, G.47, S.48, G.49, K.50, S.51 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.45, B:G.47, B:S.48, B:G.49, B:K.50, B:S.51 Salt bridges: B:K.50 SO4.4: 4 residues within 4Å: Chain B: H.75, R.79, R.82, Y.118 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.75, B:Y.118 Salt bridges: B:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kono, T. et al., A RuBisCO-mediated carbon metabolic pathway in methanogenic archaea. Nat Commun (2017)

Release Date

2017-01-18

Peptides

Phosphoribulokinase/uridine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphoribulokinase/uridine kinase