SMTL ID : 5b3g.1

The crystal structure of the heterodimer of SHORT-ROOT and SCARECROW GRAS domains

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: R.70, S.258, F.259, R.262, A.305, V.306, G.307 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.259, A:G.307, A:G.308 Salt bridges: A:R.70, A:R.262

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: H.233, W.236 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: G.278, A.279, S.280, Y.281, G.282 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.280 EDO.6: 5 residues within 4Å: Chain B: F.209, C.210, P.214, R.258, M.259 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.258, B:R.258

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 9 residues within 4Å: Chain A: V.96, F.99, Q.100, H.113, I.137, M.138, Q.139, G.140, L.141 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.96, A:H.113, A:Q.139, A:Q.139, A:G.140, A:L.141 Water bridges: A:Q.142 PEG.5: 6 residues within 4Å: Chain A: Q.139, G.140, L.141, P.144, R.178, F.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.178 PEG.7: 7 residues within 4Å: Chain B: S.206, S.207, T.208, F.209, C.210, T.234, M.252 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.204, B:T.208, B:F.209, B:C.210 Water bridges: B:S.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirano, Y. et al., Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD. Nat Plants (2017)

Release Date

2017-03-01

Peptides

Protein SCARECROW: A
Protein SHORT-ROOT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein SCARECROW

Protein SHORT-ROOT