SMTL ID : 5b43.1

Crystal structure of Acidaminococcus sp. Cpf1 in complex with crRNA and target DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.15, Y.600, N.718, Y.882 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.15, A:Q.15, A:Y.600, A:Y.600, A:N.718 EDO.2: 5 residues within 4Å: Chain A: T.5, Q.6, G.9, F.10, R.894 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.6, A:Q.6, A:R.894 EDO.3: 9 residues within 4Å: Chain A: F.1082, V.1083, P.1085, M.1122, L.1132, P.1133, G.1134, L.1302, Q.1306 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.1083, A:V.1083, A:Q.1306, A:Q.1306

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: K.760 Chain B: A.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.760

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamano, T. et al., Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA. Cell (2016)

Release Date

2016-05-04

Peptides

CRISPR-associated endonuclease Cpf1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CRISPR-associated endonuclease Cpf1