SMTL ID : 5b4p.1 (1 other biounit)

Complex structure of human C5a and its binding repebody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-oligomer

Ligands

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 3 residues within 4Å: Chain A: I.138, E.162 Chain B: K.15 No protein-ligand interaction detected (PLIP) 1PE.5: 6 residues within 4Å: Chain A: Y.69, Y.91, E.114 Chain B: K.15, H.16, S.17 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:H.16, B:S.17, B:S.17, B:S.17, A:Y.69, A:E.114 Water bridges: A:Y.91

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: D.79, S.81, A.82 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.79, A:S.81, A:S.81 Water bridges: A:Q.62, A:Q.62 SO4.3: 3 residues within 4Å: Chain A: D.127, G.128, D.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.127, A:D.131, A:D.131 SO4.4: 1 residues within 4Å: Chain A: K.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.90 Salt bridges: A:K.113 SO4.6: 1 residues within 4Å: Chain B: E.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.-S. et al., Complex structure of human C5a and its binding repebody. To Be Published

Release Date

2017-04-12

Peptides

repebody: A
C5a anaphylatoxin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

repebody

C5a anaphylatoxin

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