SMTL ID : 5b64.1

A novel binding mode of MAGUK GK domain revealed by DLG GK domain in complex with KIF13B MBS domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.113 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.113 SO4.2: 4 residues within 4Å: Chain A: E.76, S.107, N.109, R.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.107, A:N.109 Salt bridges: A:R.113 SO4.3: 3 residues within 4Å: Chain A: R.44, R.47, H.83 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.47, A:H.83 SO4.4: 3 residues within 4Å: Chain A: V.59, S.60, S.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.60, A:S.61 SO4.5: 5 residues within 4Å: Chain A: G.17, P.18, T.19, K.20, D.21 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.19, A:T.19, A:K.20, A:D.21, A:D.21, A:R.22 SO4.8: 4 residues within 4Å: Chain A: K.20 Chain B: D.104, P.106, R.109 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.20, B:R.109

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: H.41, D.68, K.73, F.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.68 GOL.7: 3 residues within 4Å: Chain A: R.62, E.63, E.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., An Atypical MAGUK GK Target Recognition Mode Revealed by the Interaction between DLG and KIF13B. Structure (2016)

Release Date

2016-10-12

Peptides

DLG GK: A
Protein Kif13b: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DLG GK

Protein Kif13b

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