SMTL ID : 5b85.1

X-ray structure of ferric F138Y sperm whale myoglobin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 16 residues within 4Å: Chain A: T.39, K.42, F.43, R.45, H.64, T.67, V.68, A.71, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:F.43, A:F.43, A:F.43, A:V.68, A:A.71, A:L.89, A:I.99, A:I.99, A:Y.103, A:L.104 Hydrogen bonds: A:S.92 Water bridges: A:H.64 Salt bridges: A:R.45, A:H.64, A:H.93, A:H.97 pi-Stacking: A:H.93 Metal complexes: A:H.93, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, F. et al., Distinct roles of a tyrosine-associated hydrogen-bond network in fine-tuning the structure and function of heme proteins: two cases designed for myoglobin. Mol Biosyst (2016)

Release Date

2016-08-10

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin