- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- monomer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x 6T4: ~{N}-(4-methyl-1,3-thiazol-2-yl)ethanamide(Non-covalent)
- 36 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.7: 3 residues within 4Å:- Chain A: R.49, W.76
- Ligands: UNX.30
Ligand excluded by PLIPUNX.8: 4 residues within 4Å:- Chain A: P.17, A.18, A.19
- Ligands: UNX.18
Ligand excluded by PLIPUNX.9: 6 residues within 4Å:- Chain A: I.33, Q.34, E.35, N.36
- Ligands: UNX.26, UNX.41
Ligand excluded by PLIPUNX.10: 4 residues within 4Å:- Chain A: H.85
- Ligands: UNX.20, UNX.35, UNX.36
Ligand excluded by PLIPUNX.11: 3 residues within 4Å:- Chain A: I.16, A.18
- Ligands: UNX.18
Ligand excluded by PLIPUNX.12: 2 residues within 4Å:- Chain A: T.32, I.33
Ligand excluded by PLIPUNX.13: 8 residues within 4Å:- Chain A: C.39, C.42, Y.43, Q.44, H.58, H.64
- Ligands: ZN.1, UNX.14
Ligand excluded by PLIPUNX.14: 6 residues within 4Å:- Chain A: C.42, Q.44, H.58, H.64
- Ligands: ZN.1, UNX.13
Ligand excluded by PLIPUNX.15: 3 residues within 4Å:- Chain A: I.71, K.100
- Ligands: UNX.41
Ligand excluded by PLIPUNX.16: 2 residues within 4Å:- Chain A: H.97
- Ligands: UNX.17
Ligand excluded by PLIPUNX.17: 3 residues within 4Å:- Chain A: L.73, H.97
- Ligands: UNX.16
Ligand excluded by PLIPUNX.18: 4 residues within 4Å:- Chain A: P.17, A.18
- Ligands: UNX.8, UNX.11
Ligand excluded by PLIPUNX.19: 1 residues within 4Å:- Chain A: H.9
Ligand excluded by PLIPUNX.20: 1 residues within 4Å:- Ligands: UNX.10
Ligand excluded by PLIPUNX.21: 2 residues within 4Å:- Chain A: P.26
- Ligands: UNX.29
Ligand excluded by PLIPUNX.22: 4 residues within 4Å:- Chain A: Q.34, E.35, I.71
- Ligands: UNX.23
Ligand excluded by PLIPUNX.23: 2 residues within 4Å:- Chain A: Q.34
- Ligands: UNX.22
Ligand excluded by PLIPUNX.24: 5 residues within 4Å:- Chain A: W.76, Y.78, Q.81
- Ligands: UNX.27, UNX.30
Ligand excluded by PLIPUNX.25: 6 residues within 4Å:- Chain A: T.32, I.33, Q.34, E.35, N.36, C.47
Ligand excluded by PLIPUNX.26: 5 residues within 4Å:- Chain A: V.23, I.33, Y.70
- Ligands: UNX.9, UNX.41
Ligand excluded by PLIPUNX.27: 3 residues within 4Å:- Chain A: R.49
- Ligands: UNX.24, UNX.30
Ligand excluded by PLIPUNX.28: 2 residues within 4Å:- Chain A: Q.81, A.82
Ligand excluded by PLIPUNX.29: 2 residues within 4Å:- Chain A: P.26
- Ligands: UNX.21
Ligand excluded by PLIPUNX.30: 5 residues within 4Å:- Chain A: R.49, Q.81
- Ligands: UNX.7, UNX.24, UNX.27
Ligand excluded by PLIPUNX.31: 2 residues within 4Å:- Chain A: W.6, V.11
Ligand excluded by PLIPUNX.32: 3 residues within 4Å:- Chain A: H.9, C.80
- Ligands: UNX.34
Ligand excluded by PLIPUNX.33: 3 residues within 4Å:- Chain A: C.30, N.52, H.54
Ligand excluded by PLIPUNX.34: 1 residues within 4Å:- Ligands: UNX.32
Ligand excluded by PLIPUNX.35: 5 residues within 4Å:- Chain A: S.74, Y.83, H.85
- Ligands: UNX.10, UNX.36
Ligand excluded by PLIPUNX.36: 3 residues within 4Å:- Chain A: P.3
- Ligands: UNX.10, UNX.35
Ligand excluded by PLIPUNX.37: 1 residues within 4Å:- Ligands: NA.43
Ligand excluded by PLIPUNX.38: 2 residues within 4Å:- Chain A: C.42, Y.43
Ligand excluded by PLIPUNX.39: 4 residues within 4Å:- Chain A: Y.46, H.58, N.61
- Ligands: UNX.40
Ligand excluded by PLIPUNX.40: 6 residues within 4Å:- Chain A: D.29, Y.46, H.54, Q.57, H.58
- Ligands: UNX.39
Ligand excluded by PLIPUNX.41: 6 residues within 4Å:- Chain A: Y.70, I.71, K.100
- Ligands: UNX.9, UNX.15, UNX.26
Ligand excluded by PLIPUNX.42: 3 residues within 4Å:- Chain A: C.30, G.31, T.32
Ligand excluded by PLIP- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harding, R.J. et al., Small Molecule Antagonists of the Interaction between the Histone Deacetylase 6 Zinc-Finger Domain and Ubiquitin. J. Med. Chem. (2017)
- Release Date
- 2016-07-27
- Peptides
- Histone deacetylase 6: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.05 Å
- Oligo State
- monomer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 2 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x 6T4: ~{N}-(4-methyl-1,3-thiazol-2-yl)ethanamide(Non-covalent)
- 36 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Harding, R.J. et al., Small Molecule Antagonists of the Interaction between the Histone Deacetylase 6 Zinc-Finger Domain and Ubiquitin. J. Med. Chem. (2017)
- Release Date
- 2016-07-27
- Peptides
- Histone deacetylase 6: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A